Posted in Research EMDB < EMD-28585 January 29, 2023 Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA structure Estimated volume from the mapCalculated resolution using FSC 0.143Calculated resolution using FSC 0.5Calculated resolution using FSC half-bitAuthor-provided resolution using FSC 0.143Author-provided resolution using FSC 0.5Author-provided resolution using FSC half-bitMap-model resolution using FSC 0.5Overall atom inclusionAverage Q-Score SpeciesGenusFamilyOrderClassPhylumKingdomSuper Kingdom SerotypeSerocomplexCategoryIsolateEnvelopedEmptyNatural host organismNatural host organism (NCBI code)Host recombinant organismHost recombinant organism (NCBI code)Host recombinant strainHost recombinant cellHost recombinant plasmidShellShell triangulationShell diameter Structure determination methodAggregation State Specimen preparation typeBuffer pHBuffer formulaBuffer nameStaining typeStaining materialGrid modelGrid materialGrid meshSupport film materialSupport film topologySupport film thicknessPretreatment typePretreatment atmosphereCryogenChamber humidityChamber temperatureVitrification pressureVitrification instrumentVitrification method Lipid protein ratioLipid mixtureInstrumentAtmosphereTemperature Fiducial typeEmbedding materialFiducial manufacturerFiducial diameterFreezing instrument Sectioning typeSectioning instrumentSectioning temperatureFinal thicknessFocused ion beanIon bean VoltageIon bean currentIon bean dose rateIon bean duration Microscope nameIllumination modeImaging modeElectron sourceAcceleration voltageC2 aperture diameterNominal CSNominal defocus (Min)Nominal defocus (Max)Calibrated defocus (Min)Calibrated defocus (Max)Nominal magnificationCalibrated magnificationSpecimen holder modelCooling holder cryogenMinimum temperatureAverage temperatureMaximum temperatureSpecimen holderMinimum tilt angleMaximum tilt angleLegacy tilt paramsPhase plateEnergy filter nameFilm or detector modelFilm/Detector categoryDetector modeScannerImaging widthImaging heightSampling intervalNumber of grids imagesNumber of real imagesNumber of diffraction imagesImaging exposure timeElectron dose per imageTilt series minimum angleTilt series maximum angleCrystallography camera lengthCrystallography tilt angle Point groupAlgorithmReconstruction resolutionReconstruction resolution methodNumber of classesHelical delta ZNumber of images usedNumber of subtomograms usedCrystal plane groupCrystal space groupNumber of selected segmentsNumber of tomogramsFinal 2D classification number of classesFinal 3D classification number of classesFinal 3D classification avg. members per classes Startup model typeStartup EMDB modelStartup PDB modelStartup insilico model Number of intensities measuredNumber of structure factorsFourier space coverageR symR mergeOverall phase errorOverall phase residualPhase error rejection criteria Map size (Kb)Data typeColRowSecCell alphaCell betaCell gammaFast axisMedium axisSlow axisMinimumMaximumAverageStdVoxel size XVoxel size YVoxel size Z Initial modelFinal modelModelling refining protocol Mask fileSpace groupPoint groupData typeDimension ColDimension RowDimension SecCell alphaCell betaCell gammaFast axisMedium axisSlow axisMinimumMaximumAverageStdVoxel size XVoxel size YVoxel size Z Additional map fileSpace groupPoint groupData typeDimension ColDimension RowDimension SecCell alphaCell betaCell gammaFast axisMedium axisSlow axisMinimumMaximumAverageStdVoxel size XVoxel size YVoxel size Z Half map fileSpace groupPoint groupData typeDimension ColDimension RowDimension SecCell alphaCell betaCell gammaFast axisMedium axisSlow axisMinimumMaximumAverageStdVoxel size XVoxel size YVoxel size Z MicroscopyCTF correctionMolecular replacementSymmetry determinationMergingSegment selectionInitial angle assignmentFinal angle assignmentSubtomogram extractionFinal 3D classificationModelling EMPIAR IDEntry DOIOrganizationOrganization typeDataset (GB)Experiment typeImageset categoryRelated EMDBsWorkflow fileHeader formatData formatNumber of imagesFrames per imageVoxel typeImage widthPixel widthImage heightPixel heightSegmentation fileSegmentation format DOIPubmedISSNASTMUniprotKbPDBe-KBAlphaFold DBUniparcINTERPROGOComplex PortalPfamCATHSCOPRefseqGenbankCASPubChemDrugBankCHEBICHEMBLCARDBANKBioImage ArchiveIDR Read more here: Source link