Single sample GSEA analysis
Hi,
I sorted specific type of cells by FACS and subjected it to RNA-seq. I want to test the enrichment of target cell type. I want to perform analysis just like GSEA to show the enrichment and get the plot which is common for GSEA (bellowing is an example for the plot which I want). However, I have just one RNA-seq data. I tested ssGSEA and GSVA which can only return a score. My question is can I get the enrichment plot by single sample data?
• 180 views
Read more here: Source link