This is the development version of planet; for the stable release version, see
planet.
Placental DNA methylation analysis tools
Bioconductor version: Development (3.17)
This package contains R functions to infer additional biological variables to supplemental DNA methylation analysis of placental data. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data. The package comes with an example processed placental dataset.
Author: Victor Yuan [aut, cre], Wendy P. Robinson [ctb]
Maintainer: Victor Yuan <victor.2wy at gmail.com>
Citation (from within R,
enter citation("planet")
):
Installation
To install this package, start R (version
“4.3”) and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("planet")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("planet")
Details
biocViews | CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software |
Version | 1.7.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (1.5 years) |
License | GPL-2 |
Depends | R (>= 4.0) |
Imports | methods, tibble, magrittr, dplyr |
LinkingTo | |
Suggests | ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | victor.rbind.io/planet github.com/wvictor14/planet |
BugReports | github.com/wvictor14/planet/issues |
Depends On Me | |
Imports Me | methylclock |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link