download a set of proteome from uniprot

download a set of proteome from uniprot

1

I have a bench of Uniprot proteome ID I would like to download in an automated way. e.g.

UP000005640
UP000001073
UP000001519

It sounds an easy task but after many tries I’m still unsuccessful, anyone has trick?

  • I tried using a for loop around wget command but I need a wild card or regex but I don’t succeed to make it work:
    wget –regex-type .fasta.gz https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/Eukaryota/UP000000226/UP000000226_*.fasta.gz

  • I tried via the website but I do not get the fasta sequences, only some general description


uniprot


download


batch

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