download a set of proteome from uniprot
I have a bench of Uniprot proteome ID I would like to download in an automated way. e.g.
UP000005640
UP000001073
UP000001519
It sounds an easy task but after many tries I’m still unsuccessful, anyone has trick?
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I tried using a for loop around
wget
command but I need a wild card or regex but I don’t succeed to make it work:
wget –regex-type .fasta.gzhttps://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/Eukaryota/UP000000226/UP000000226_*.fasta.gz
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I tried via the website but I do not get the fasta sequences, only some general description
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