How to make a UMAP for single cell data and color cells by average expression of a list of cells in scanpy?
Hello,
I have single cell and bulk RNA seq data for both of which I have performed some basic analysis.
For the bulk RNA seq data I have performed DESe2 and I have gotten a list of DE genes. I was wondering if it is possible to project that list of genes to the single cell data.
I would like to make a UMAP where the cells are colored by the average expression of the bulk signature genes. Is that possible and if yes how could I do it?
Thank you
• 18 views
Read more here: Source link