addGeneAnnotation.pl: not found

addGeneAnnotation.pl: not found

2

hey community, I am facing a problem related to the quantification step of RNAseq analysis:
I have run this command ‘

/home/aarmich/Documents/000TOOLS/homer/bin/analyzeRepeats.pl rna hg38 -count genes -d /home/aarmich/Documents/000TOOLS/homer/A549ctrl_RNAseq_hg38 /home/aarmich/Documents/000TOOLS/homer/A549TGFB_RNAseq_hg38 -noadj > lastt.txt 

and terminal is responding like this:

missing NM_003718...
missing NM_152604...
missing NM_001114132...
missing NR_149079...
missing NM_138286...
missing NM_001040431...
missing NM_001320100...
missing NM_173602...
missing NR_046366...
missing NM_001330283...
missing NM_001282444...
missing NM_001317096...
missing NM_000084...
missing NM_207012...
missing NM_001352956...
missing NM_031303...
missing NM_052987...
missing NM_021907...
missing NR_046325...
missing NR_135499...
    Printing output
sh: 1: addGeneAnnotation.pl: not found
        Printed 4344 of 70507 repeats (expression >= -1e+20)

did any one faced the same problem? thanks.


repeats

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