biomaRt crashes R studio

biomaRt crashes R studio

0

Hey everyone,

I just wanted to execute a script that worked before. However, everytime I try to run it now RStudio gets unresponsive. I didn’t change anything. Does anyone else experience this?

This is an extract from my script:

library(biomaRt)
...
mart <- useMart("ENSEMBL_MART_ENSEMBL")
mart <- useDataset("hsapiens_gene_ensembl", mart)
data_table[, symbol := getBM(mart = mart,
                             attributes = "hgnc_symbol",
                             filters = "ensembl_gene_id",
                             values = `Ensembl Gene ID`)]

Best


biomaRt

• 50 views


Login
before adding your answer.

Read more here: Source link