Nextflow Stringtie: command not found Error

Nextflow Stringtie: command not found Error

1

Im trying to use stringtie in my nextflow pipeline and I’ve tried to write the stringtie code and have gotten this error. Im not sure how to correct this.

code

error

Any help would be greatly appreciated!


nextflow


rna-seq


stringtie

• 25 views

That’s not a Nextflow but a simple bash error. The tool binary is not in PATH. Put the folder with the binary into PATH, or use conda or a container, see Nextflow docs for the latter two.


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