doing PBS(population branch statistics) in ANGSD
Hi everyone, i am trying to do a Population branch statistic on my data i have done the first step where i calculate saf, now i need to do the second step calculating 2dsfs. when i submit the script on the cluster.
I need to use this command: ./realSFS pop1.saf.idx pop2.saf.idx > p1.p2.ml
I get this
-> angsd version: 0.921 (htslib: 1.8-37-gcaed43e) build(Jul 3 2018 11:38:01)
-> Must choose input file -bam/-glf/-glf3/-pileup/-i/-vcf-gl/-vcf-gp/-vcf-pl/-glf10_text filename
how do I go about this?
your input will be highly valued.
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