Save a collection of gene-sets in a .gmt file format.

R: Save a collection of gene-sets in a .gmt file format.

write_geneSets_to_gmt {massiveGST} R Documentation

Save a collection of gene-sets in a .gmt file format.

Description

Write a collection of gene sets as arranged in this package in a gmt file format.

Usage

write_geneSets_to_gmt(gs, fileName)

Arguments

gs

a character vector of gene-sets

fileName

a character value; “gene_sets.gmt” (default)

Value

No return value.

Author(s)

Stefano M. Pagnotta

See Also

get_geneSets_from_msigdbr, get_geneSets_from_local_files

Examples

library(massiveGST)

# get the gene-sets
geneSets <- get_geneSets_from_msigdbr(category = "H", what = "gene_symbol")

# save the gene-sets
fname <- file.path(tempdir(), "hallmarks.gmt")
write_geneSets_to_gmt(geneSets, fileName = fname)


[Package massiveGST version 1.0.1 Index]

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