KEGG enrichment in R and gene IDs

KEGG enrichment in R and gene IDs

2

@239caad3

Last seen 3 days ago

Belgium

Hi,

I am trying to run a KEGG enrichment analysis on my data. My genes are in SYMBOL, which I converted to ENTREZID, but I need them in “kegg” or “ncbi-geneID” to run enrichKEGG.
I looked for packages that would convert these, but they are not updated: MS_convertGene, keggConv, KEGGREST, topGO.

What worked was using the website: www.genome.jp/kegg/tool/conv_id.html
But I have many gene lists to be converted…..

Is there any tool that I could use in R to convert these IDs in a more handy way?

Thank you.
Laia


KEGG


enrichKEGG


R


entrezid

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