Bioconductor – RDRToolbox

 
 

This package is for version 2.11 of Bioconductor;
for the stable, up-to-date release version, see
RDRToolbox.

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 2.11

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

Citation (from within R,
enter citation("RDRToolbox")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("RDRToolbox")

 

PDF

R Script

A package for nonlinear dimension reduction with Isomap and LLE.

PDF

plot3D.pdf

PDF

RDRToolbox-003.pdf

PDF

SwissRoll.pdf
PDF   Reference Manual

Details

biocViews ClusterValidation, Dimension, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 2.7 (R-2.12) (5.5 years)
License GPL (>= 2)
Depends R (>= 2.9.0), rgl
Imports graphics, grDevices, methods, stats, MASS, rgl
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