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This package is for version 2.11 of Bioconductor;
for the stable, up-to-date release version, see
RDRToolbox.
A package for nonlinear dimension reduction with Isomap and LLE.
Bioconductor version: 2.11
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>
Citation (from within R,
enter citation("RDRToolbox")
):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RDRToolbox")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("RDRToolbox")
A package for nonlinear dimension reduction with Isomap and LLE. | ||
plot3D.pdf | ||
RDRToolbox-003.pdf | ||
SwissRoll.pdf | ||
Reference Manual |
Details
biocViews | ClusterValidation, Dimension, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization |
Version | 1.8.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.9.0), rgl |
Imports | graphics, grDevices, methods, stats, MASS, rgl |
LinkingTo | |
Suggests | golubEsets |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Package Archives
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Read more here: Source link