Cut&Run and heatmap

Cut&Run and heatmap

0

Hello guys,
I am doing cut&run analysis from some transcription factors and I have three replicate for each sample. After bowtie2 alignment and MACS2 Peakcalling individually for each sample I need not plot heatmap. I have three replicates of BAM files and three replicates of MACS2 output. How should I plot heatmap?


and


bowtie2


MACS2

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