DOI: 10.18129/B9.bioc.MsBackendSql
SQL-based Mass Spectrometry Data Backend
Bioconductor version: Release (3.17)
SQL-based mass spectrometry (MS) data backend supporting also storange and handling of very large data sets. Objects from this package are supposed to be used with the Spectra Bioconductor package. Through the MsBackendSql with its minimal memory footprint, this package thus provides an alternative MS data representation for very large or remote MS data sets.
Author: Johannes Rainer [aut, cre] , Chong Tang [ctb], Laurent Gatto [ctb]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
Citation (from within R,
enter citation("MsBackendSql")
):
Installation
To install this package, start R (version
“4.3”) and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MsBackendSql")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("MsBackendSql")
Storing Mass Spectrometry Data in SQL Databases | ||
Reference Manual |
Details
biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Version | 1.0.1 |
In Bioconductor since | BioC 3.17 (R-4.3) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 4.2.0), Spectra(>= 1.9.12) |
Imports | BiocParallel, S4Vectors, methods, ProtGenerics, DBI, MsCoreUtils, IRanges, data.table, progress |
LinkingTo | |
Suggests | testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), RSQLite, msdata, rmarkdown, microbenchmark, mzR |
SystemRequirements | |
Enhances | |
URL | github.com/RforMassSpectrometry/MsBackendSql |
BugReports | github.com/RforMassSpectrometry/MsBackendSql/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link