ColabFold local heterodimer prediction script making

ColabFold local heterodimer prediction script making

0

Hey
Im writing a simple script (for dimers now – rater heterodimers) for ColabFold local (Release v1.5.0) similar to AlphaFoldPulldown. My motivation is that it is much easier to install and less complicated. And the results are very similar. So far I have implemented the scores: pdockq, mpdockq, basic (iptm, ptm, pLDDT) [by the way, I don’t know what exactly ‘iptm+ptm’ is because I hardly use AlphaFold2. is it an average of iptm and ptm?]. I still plan to add PI-score and others. I am asking for your suggestions on what I could add/change and for your understanding. I will eventually make the repository available on github.

Cheers

Xyl


tool


protein


complex


prediction


AlphaFold

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