Bioconductor – TDbasedUFEadv

DOI: 10.18129/B9.bioc.TDbasedUFEadv  

Advanced package of tensor decomposition based unsupervised feature extraction

Bioconductor version: Release (3.17)

This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R,
enter citation("TDbasedUFEadv")):

Installation

To install this package, start R (version
“4.3”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFEadv")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("TDbasedUFEadv")

 

Details

biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License GPL-3
Depends
Imports TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, RTCGA, stats, enrichplot, DOSE, STRINGdb, enrichR, hash, shiny
LinkingTo
Suggests knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata
SystemRequirements
Enhances
URL github.com/tagtag/TDbasedUFEadv
BugReports github.com/tagtag/TDbasedUFEadv/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Installation
instructions to use this
package in your R session.

Read more here: Source link