DOI: 10.18129/B9.bioc.TDbasedUFEadv
Advanced package of tensor decomposition based unsupervised feature extraction
Bioconductor version: Release (3.17)
This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.
Author: Y-h. Taguchi [aut, cre]
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R,
enter citation("TDbasedUFEadv")
):
Installation
To install this package, start R (version
“4.3”) and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TDbasedUFEadv")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("TDbasedUFEadv")
Details
biocViews | FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (< 6 months) |
License | GPL-3 |
Depends | |
Imports | TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, RTCGA, stats, enrichplot, DOSE, STRINGdb, enrichR, hash, shiny |
LinkingTo | |
Suggests | knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata |
SystemRequirements | |
Enhances | |
URL | github.com/tagtag/TDbasedUFEadv |
BugReports | github.com/tagtag/TDbasedUFEadv/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link