Bioconductor – SNPlocs.Hsapiens.dbSNP149.GRCh38

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP149.GRCh38  

 

This package is for version 3.15 of Bioconductor;
for the stable, up-to-date release version, see
SNPlocs.Hsapiens.dbSNP149.GRCh38.

SNP locations for Homo sapiens (dbSNP Build 149)

Bioconductor version: 3.15

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn’t alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be “injected” in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès <hpages at fredhutch.org>

Citation (from within R,
enter citation("SNPlocs.Hsapiens.dbSNP149.GRCh38")):

Installation

To install this package, start R (version
“4.2”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP149.GRCh38")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.20
License Artistic-2.0
Depends BSgenome(>= 1.43.4)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase3.GRCh38, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomADex.r2.1.GRCh38, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.v3.1.1.GRCh38, MafH5.gnomAD.v3.1.2.GRCh38
Links To Me

Package Archives

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Installation
instructions to use this
package in your R session.


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