Prokka installation – compilation aborted
Hi,
I installed Prokka using this code posted at github.com/tseemann/prokka
sudo apt-get install libdatetime-perl libxml-simple-perl libdigest-md5-perl git default-jre bioperl
sudo cpan Bio::Perl
git clone https://github.com/tseemann/prokka.git $HOME/prokka
$HOME/prokka/bin/prokka --setupdb
All the steps worked pretty well except the last line for database indexing $HOME/prokka/bin/prokka --setupdb
I got this compilation error message:
Can’t locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: /home/miniconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/miniconda3/lib/site_perl/5.26.2 /home/miniconda3/lib/5.26.2/x86_64-linux-thread-multi /home/miniconda3/lib/5.26.2 .) at /home/prokka/bin/prokka line 29.
BEGIN failed–compilation aborted at /home/prokka/bin/prokka line 29.
I ran cpan install XML::Simple
Then ran $HOME/prokka/bin/prokka --setupdb
and still have the same error. Any help, please?
Thanks
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