Oosthuizen T, Howes LM (2022) The development of forensic DNA analysis: new debates on the issue of fundamental human rights. Forensic Sci Int Genet 56:102606
Nwawuba Stanley U et al (2020) Forensic DNA profiling: autosomal short tandem repeat as a prominent marker in crime investigation. Malays J Med Sci 27(4):22–35
Xu QN, Li CT, Liu XL (2018) Research progress on discrimination of monozygotic twins. Fa Yi Xue Za Zhi 34(6):672–677
Yang YR et al (2012) Progress on epigenetics applications in forensic science. Fa Yi Xue Za Zhi 28(5):366–370
Vidaki A, Daniel B, Court DS (2013) Forensic DNA methylation profiling–potential opportunities and challenges. Forensic Sci Int Genet 7(5):499–507
Marqueta-Gracia JJ et al (2018) Differentially methylated CpG regions analyzed by PCR-high resolution melting for monozygotic twin pair discrimination. Forensic Sci Int Genet 37:e1–e5
Castellani CA et al (2014) Biological relevance of CNV calling methods using familial relatedness including monozygotic twins. BMC Bioinformatics 15:114
Planterose Jimenez B et al (2021) Equivalent DNA methylation variation between monozygotic co-twins and unrelated individuals reveals universal epigenetic inter-individual dissimilarity. Genome Biol 22(1):18
Xiao C et al (2019) Differences of microRNA expression profiles between monozygotic twins’ blood samples. Forensic Sci Int Genet 41:152–158
Nistico L et al (2006) Concordance, disease progression, and heritability of coeliac disease in Italian twins. Gut 55(6):803–808
Sites ER et al (2017) Analysis of copy number variants in 11 pairs of monozygotic twins with neurofibromatosis type 1. Am J Med Genet A 173(3):647–653
Stewart JB, Chinnery PF (2021) Extreme heterogeneity of human mitochondrial DNA from organelles to populations. Nat Rev Genet 22(2):106–118
Anderson S et al (1981) Sequence and organization of the human mitochondrial genome. Nature 290(5806):457–465
Chiaratti MR, Chinnery PF (2022) Modulating mitochondrial DNA mutations: factors shaping heteroplasmy in the germ line and somatic cells. Pharmacol Res 185:106466
Uchiumi T, Kang D (2012) The role of TFAM-associated proteins in mitochondrial RNA metabolism. Biochim Biophys Acta 1820(5):565–570
Yasukawa T, Kang D (2018) An overview of mammalian mitochondrial DNA replication mechanisms. J Biochem 164(3):183–193
Kennedy SR et al (2013) Ultra-sensitive sequencing reveals an age-related increase in somatic mitochondrial mutations that are inconsistent with oxidative damage. PLoS Genet 9(9):e1003794
Legati A et al (2021) Current and new next-generation sequencing approaches to study mitochondrial DNA. J Mol Diagn 23(6):732–741
Mertens J et al (2019) Detection of heteroplasmic variants in the mitochondrial genome through massive parallel sequencing. Bio Protoc 9(13):e3283
Wang Z et al (2015) Differentiating between monozygotic twins through next-generation mitochondrial genome sequencing. Anal Biochem 490:1–6
McElhoe JA et al (2014) Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq. Forensic Sci Int Genet 13:20–29
Yu H et al (2022) Hot spots-making directed evolution easier. Biotechnol Adv 56:107926
Chen L et al (2020) Highly accurate mtGenome haplotypes from long-read SMRT sequencing can distinguish between monozygotic twins. Forensic Sci Int Genet 47:102306
Gaudin M, Desnues C (2018) Hybrid capture-based next generation sequencing and its application to human infectious diseases. Front Microbiol 9:2924
Shih, S.Y., et al., Correction: Shelly Y. Shih; et al.; Applications of probe capture enrichment next generation sequencing for whole mitochondrial genome and 426 nuclear SNPs for forensically challenging samples. Genes 2018, 9, 49.
Yin L et al (2021) Validation of the Microreader 28A ID System: A 6-dye multiplex amplification assay for forensic application. Electrophoresis 42(19):1928–1935
Shih SY et al (2018) Applications of probe capture enrichment next generation sequencing for whole mitochondrial genome and 426 nuclear SNPs for forensically challenging samples. Genes (Basel) 9(1)
Lang J et al (2021) Evaluation of the MGISEQ-2000 sequencing platform for illumina target capture sequencing libraries. Front Genet 12:730519
Chen S et al (2018) fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17):i884–i890
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754–1760
McKenna A et al (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20(9):1297–1303
Li H et al (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25(16):2078–2079
Yang H, Wang K (2015) Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR. Nat Protoc 10(10):1556–1566
Bensasson D et al (2001) Mitochondrial pseudogenes: evolution’s misplaced witnesses. Trends Ecol Evol 16(6):314–321
Parakatselaki ME, Ladoukakis ED (2021) mtDNA heteroplasmy: origin, detection, significance, and evolutionary consequences. Life (Basel) 11(7):633
Vidaki A et al (2017) Epigenetic discrimination of identical twins from blood under the forensic scenario. Forensic Sci Int Genet 31:67–80
Xu J et al (2015) LINE-1 DNA methylation: a potential forensic marker for discriminating monozygotic twins. Forensic Sci Int Genet 19:136–145
Zhang N et al (2015) Intra-monozygotic twin pair discordance and longitudinal variation of whole-genome scale DNA methylation in adults. PLoS One 10(8):e0135022
Vidaki A et al (2018) Investigating the epigenetic discrimination of identical twins using buccal swabs, saliva, and cigarette butts in the forensic setting. Genes (Basel) 9(5):252
Fang C et al (2019) MicroRNA profile analysis for discrimination of monozygotic twins using massively parallel sequencing and real-time PCR. Forensic Sci Int Genet 38:23–31
Li D et al (2022) Advances in bioactivity of MicroRNAs of plant-derived exosome-like nanoparticles and milk-derived extracellular vesicles. J Agric Food Chem 70(21):6285–6299
Liang H et al (2014) The origin, function, and diagnostic potential of extracellular microRNAs in human body fluids. Wiley Interdiscip Rev RNA 5(2):285–300
Rolf B, Krawczak M (2021) The germlines of male monozygotic (MZ) twins: Very similar, but not identical. Forensic Sci Int Genet 50:102408
Burr SP, Chinnery PF (2022) Measuring single-cell mitochondrial DNA copy number and heteroplasmy using digital droplet polymerase chain reaction. J Vis Exp 185:e63870
Abd Radzak SM et al (2022) Insights regarding mitochondrial DNA copy number alterations in human cancer (Review). Int J Mol Med 50(2):1–8
Wang Y et al (2022) Genetic landscape of human mitochondrial genome using whole-genome sequencing. Hum Mol Genet 31(11):1747–1761
Dulovic-Mahlow M et al (2021) Discordant monozygotic parkinson disease twins: role of mitochondrial integrity. Ann Neurol 89(1):158–164
Yin D et al (2022) Gapless genome assembly of East Asian finless porpoise. Sci Data 9(1):765
Sun Y et al (2021) Characterizing sensitivity and coverage of clinical WGS as a diagnostic test for genetic disorders. BMC Med Genomics 14(1):102
Lee J, Jung J (2022) First record of the complete mitochondrial genome of Tubifex tubifex (Muller) 1774 (Annelida; Clitellata; Oligochaeta) and phylogenetic analysis. Mitochondrial DNA B Resour 7(7):1208–1210
Jeon SA et al (2021) Comparison between MGI and Illumina sequencing platforms for whole genome sequencing. Genes Genomics 43(7):713–724
Zhu K et al (2021) Comparative Performance of the MGISEQ-2000 and Illumina X-Ten Sequencing Platforms for Paleogenomics. Front Genet 12:745508
Korostin D et al (2020) Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing. PLoS One 15(3):e0230301
Bardan F, Higgins D, Austin JJ (2023) A custom hybridisation enrichment forensic intelligence panel to infer biogeographic ancestry, hair and eye colour, and Y chromosome lineage. Forensic Sci Int Genet 63:102822
Bose N et al (2018) Target capture enrichment of nuclear SNP markers for massively parallel sequencing of degraded and mixed samples. Forensic Sci Int Genet 34:186–196
Tu J et al (2015) Systematic characteristic exploration of the chimeras generated in multiple displacement amplification through next generation sequencing data reanalysis. PLoS One 10(10):e0139857
Read more here: Source link