Sequence alignment matrix

Sequence alignment matrix

2

Hi there,

I’m searching for a sequence alignment tool that can provide me with a matrix like the one on the attached image. I need the 4 parameters Identity(%), Homologs (identical + conserved + weakly conserved), Unconserved and Coverage for all combinations AB, AC, CB etc. I have about 20 sequences this needs to be performed on. I have tried with ClustalW, but I only get an Identity matrix and not the other 3 parameters.
If you know of any such service out there that’ll provide me with this (without having to manually use pairwise alignments on all sequences) It’ll be greatly appreciated!

Thanks!

alignment matrix


alignment


protein


sequence

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