Sequence alignment matrix
Hi there,
I’m searching for a sequence alignment tool that can provide me with a matrix like the one on the attached image. I need the 4 parameters Identity(%), Homologs (identical + conserved + weakly conserved), Unconserved and Coverage for all combinations AB, AC, CB etc. I have about 20 sequences this needs to be performed on. I have tried with ClustalW, but I only get an Identity matrix and not the other 3 parameters.
If you know of any such service out there that’ll provide me with this (without having to manually use pairwise alignments on all sequences) It’ll be greatly appreciated!
Thanks!
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