Category: cnetplot

Bioconductor – Bioconductor 3.14 Released

Home Bioconductor 3.14 Released October 27, 2021 Bioconductors: We are pleased to announce Bioconductor 3.14, consisting of 2083 software packages, 408 experiment data packages, 904 annotation packages, 29 workflows and 8 books. There are 89 new software packages, 13 new data experiment packages, 10 new annotation packages, 1 new workflow,…

Continue Reading Bioconductor – Bioconductor 3.14 Released

Can cnetplot plot points change shape in clusterprofiler?

Can cnetplot plot points change shape in clusterprofiler? 0 I have a cnetplot and I am wondering if it is possible for me to do further categorising of the plot by point shape? I have a cnetplot of genes and their interacting pathways, but the genes also have a few…

Continue Reading Can cnetplot plot points change shape in clusterprofiler?

arguments to change color, node size and labels size not working

cnetplot() : arguments to change color, node size and labels size not working 0 In cnetplot(), I am trying to use the arguments cex_category and cex_gene to change node size, cex_label_category and cex_label_gene to change labels size, and color_category and color_gene to change colors. However, none of these arguments seem…

Continue Reading arguments to change color, node size and labels size not working

How to colour points in cnetplot of clustprofiler?

I have a cnetplot from running enrichment with kegg using clusterprofiler. I have scores input as the fold change but for each gene in the plot they are not varying in colour to show their difference in the fold change score. My dataset is genes of entrez IDs and then…

Continue Reading How to colour points in cnetplot of clustprofiler?