Category: EMBOSS

the way to find pseudogenes in my scaffolds of genome

the way to find pseudogenes in my scaffolds of genome 3 Hello Recently, I assembled genome of a beetle living underground. My interest is searching pseudogenes (premature stop codon or frameshifts). I conducted tblastn using a few genes of model organisms (Tribolium) as query. But no premature stop codons were…

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Is it possible to use a loop to get the EMBOSS Merger function to work on multiple FASTA files?

Hello all, Previously, I posted about a question in a similar vein (see here) BUT now, 2 weeks later, I think I am nearly there! I plan to update that previous post and explain what I’ve done once I’ve tackled this final bit. (TL;DR my other question: I used the…

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Getting the same alignment from needle (emboss) and ggsearch36

Getting the same alignment from needle (emboss) and ggsearch36 0 I used to run ggsearch36 from the fasta package for NW alignment of proteins and now need to switch to needle from emboss, as ggsearch36 skips low-scoring alignments, whereas needle can return all. I’m looking for the correct configuration to…

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blast protein alignment

28 set blast protein alignment Posted at 20:44h in Sem categoria by BLAST applied the standard genetic code for Query, translating GTG into valine (V). The BLAST is a set of algorithms that attempt to find a short fragment of a query sequence that aligns perfectly with a fragment of…

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Travelling & touring: By Burzil Dube – Hotel edifices in dire need of ‘DNA testing’

VARIOUS theories have been thrown around concerning origins and treatment of Covid-19 whose ripple effects continue to be felt the world over. A similar scenerio is also taking shape in Zimbabwe where DNA test results have left a trail of broken families. DNA stands for deoxyribonucleic  and has been effective…

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New biostar-tools metaport for FreeBSD

FYI, FreeBSD users can now install all the bioinformatics software referenced by the Biostar Handbook via FreeBSD ports. Everything except bedGraphToBigWig can be installed simply by running pkg install biostar-tools bedGraphToBigWig is part of ucsc-userapps, which cannot be redistributed for licensing reasons, so there is no binary package. However, the…

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Is it possible to isolate and merge overlapping hits from a BLAST search Aligned Fasta file?

Hello all, Hope you’re well. I started a PhD in Jan this year and frankly I am struggling. I’m coming into the second week of trying to figure out how to attempt this problem and it’s honestly starting to get to me a bit – the current task I’m working…

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Dnaman software manual

Dnaman software manual DNADynamo DNA Sequence Analysis SoftwareCLC Genomics Workbench – Qiagen They have sent a man to locate the key. He was making notes with a slim gold pen on a Gucci pad? When I married my husband, that all…

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EMBOSS transeq lines with “(REVERSE SENSE)” in not reverse sence translations(?)

EMBOSS transeq lines with “(REVERSE SENSE)” in not reverse sence translations(?) 0 Hi good day. Sorry, I have a silly doubt, if someone could help me I would really appreciate it. You see, I’m using EMBOSS’s transeq tool (something new for me) to translate an ORF file. When translating the…

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Altenew Blossoming Branches 3D Embossing Folder for Card Making

Altenew Blossoming Branches 3D Embossing Folder for Card Making Skip to content Read more here: Source link

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Patek Philippe Aquanaut Brown Embossed Dial 5167R-001 Watch

Description Patek Philippe Aquanaut Brown Embossed Dial 5167R-001 When launched in 1997, the Aquanaut created a sensation. It was young, modern and unexpected. Its case was a rounded octagon, inspired by that of the Nautilus. And it sported a “tropical” strap, made of a new composite material ultra-resistant to wear,…

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Corelle 18-Piece Embossed Bella Faenza Vitrelle Dinnerware Set – White – Walmart.com

This button opens a dialog that displays additional images for this product with the option to zoom in or out. Report incorrect product information Corelle Average Rating:(5.0) starsout of 5 stars1 ratings, based on1reviews 2 comments $122.00$122.00$122.00$122.00 123456789101112Qty: Add to cart Free delivery Arrives by Tue, Sep 14 More delivery…

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Failed to open filename / unable to read

Failed to open filename / unable to read – Ubuntu 1 Hii, i’ve been trying using primersearch from emboss on ubuntu but this keeps getting me the same error primersearch -seqall filename.fna -infile filename.txt -mismatchpercent 10 -outfile filename.primersearch Error: Failed to open filename ‘filename’ Error: Unable to read sequence ‘filename’…

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