Category: InferCNV

Is there infer CNV like python library which works for Python 3.7.1 (colab/kaggle) ? (Problem: infercnvpy

There is nice Python lib : pypi.org/project/infercnvpy/ which infers copy number variations from the single-cell RNA seq data. But it requires Python 3.8 and on free clouds like colab (or kaggle) one has 3.7.1 Question: Is there infer CNV like python library which works for Python 3.7.1 (colab/kaggle) ? Or…

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InferCNV how to choose the right reference?

InferCNV how to choose the right reference? 1 Hello everyone! Could you help me to choose the correct reference for scRNA data if I need to identify CNVs among the malignant clusters that are represented as immune cells with an epithelial phenotype (CTC). What is more correct to take healthy…

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