Category: nextflow

Computational Biology Trainer for VIB and ELIXIR Belgium

Description Posted Date 18 Oct 2021 Locations Ghent Center VIB Bioinformatics Core Type Bio IT Positions 1 About VIB and ELIXIR Belgium VIB is an entrepreneurial non-profit research institute with a clear focus on ground-breaking strategic basic research in life sciences and operates in close partnership with the five universities…

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Senior Computational Biologist I

Senior Computational Biologist I Company Overview At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence and improving outcomes. We’re treating cancer, one patient…

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Is it possible to integrate shell scripts in snakemake

Is it possible to integrate shell scripts in snakemake 0 Hello, I need to integrate as inputs/outputs scripts written in python, R as well as shell scripts. I also would like to add to this list jupyter notebooks in constructing modular pipelines. While I found in the documentation about snakemake…

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dabble-of-devops-bioanalyze/bioanalyze-docker-images: Docker Images for Jupyterhub + Bioinformatics

BioAnalyze Docker Images These docker images are built to use as a part of a full stack Bioinformatics Analysis Environment. Each image can be used on it’s own or as a part of a Jupyterhub Cluster. Each image is meant to be a full fledged ecosystem for Bioinformatics. Images: Bioinformatics…

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Job vacancy in Global Worldwide: Bioinformatics Scientist – Senior Scientist at Arcus Biosciences

Job details Job type full-time Full job description Bioinformatics scientist – senior bioinformatics scientist Arcus is seeking a scientist-srScientist that will work in a highly embedded, collaborative model with colleagues across the organizationCandidate will work closely with translational and biology research scientists in the development of novel therapeutics and biomarkers…

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CyberCoders Bioinformatics Scientist (100% Remote) in San Francisco, CA | 667734135

Bioinformatics Scientist (100% Remote) If you are a Bioinformatics Scientist (100% Remote) with experience, please read on! Top Reasons to Work with Us -Great location in San Francisco-Competitive compensation-Become one of the early stage employees of our fast growing company-Opportunity for growth-Vacation-Full Benefits!-Paid Holidays What You Will Be Doing -Own…

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Bioinformatics Pipeline Development with Nextflow (November 22-25, 2021)

Bioinformatics Pipeline Development with Nextflow How to manage your own data analysis pipelines using workflow management systems When? November 22-25, 2021 9 am – 5 pm (CET) Where? Online Link? www.ecseq.com/workshops/workshop_2021-10-Bioinformatics-Pipeline-Development-with-Nextflow-Online-Course.html Streamline your research through the development of reproducible analysis pipelines In a nutshell Learn the fundamental best-practices of bioinformatic…

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Bioinformatics Officer – Analytical Scientist at The Institute of Cancer Research

Length of Contract: till 30 September 2024 The Institute of Cancer Research, London, is one of the world’s most influential cancer research organisations, with an outstanding record of achievement dating back more than 100 years. We provided the first convincing evidence that DNA damage is the basic cause of cancer, and…

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Jobot hiring Senior Bioinformatics Engineer in South San Francisco, California, United States

Develop, deploy, and maintain data infrastructures capable of processing data related to next-generation sequencing.This Jobot Job is hosted by Augie Ullmann Are you a fit? Easy Apply now by clicking the “Apply” button and sending us your resume. Salary $130,000 – $200,000 per year A Bit About Us Our Client…

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Optello hiring Bioinformatics Scientist (100% Remote) in San Francisco, California, United States

If you are a Bioinformatics Scientist (100% Remote) with experience, please read on! Top Reasons to Work with Us Great location in San Francisco Competitive compensation Become one of the early stage employees of our fast growing company Opportunity for growth Vacation Full Benefits! Paid Holidays What You Will Be…

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CyberCoders hiring Bioinformatics Scientist (100% Remote) in San Francisco, California, United States

If you are a Bioinformatics Scientist (100% Remote) with experience, please read on!Top Reasons to Work with Us-Great location in San Francisco-Competitive compensation -Become one of the early stage employees of our fast growing company -Opportunity for growth -Vacation -Full Benefits! -Paid HolidaysWhat You Will Be Doing-Own our NGS pipeline,…

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A pairwise genome alignment pipeline using LAST and Nextflow

Tool:A pairwise genome alignment pipeline using LAST and Nextflow 0 I have prepared a pairwise genome alignment pipeline for Nextflow and plan to submit it to nf-core as a standalone pipeline or a subworkflow. Using tools from the LAST suite, it takes genomes in FASTA format, trains itself to find…

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Illumina hiring Bioinformatics Scientist in San Diego, California, United States

Position SummaryThe Bioinformatics Scientist group contributes to the development of new sequencing solutions with a focus on infectious disease. The team is responsible for defining and creating workflows that enable simplified analysis of customer data, integrating best-in-class community tools as well as developing new methods and algorithms to be deployed…

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BioSpace hiring Bioinformatics Engineer in Los Angeles, California, United States

ResponsibilitiesAs a Bioinformatics Engineer, you will be part of a team of molecular biologists, medical geneticists, and bioinformaticians working together to analyze new and archival clinical cases using high throughput sequencing. As one of a newer team of software engineers, you will have the unique opportunity to design new in-house…

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Tools or Method for batch analysis of Paired end WES data in a queue way.

Tools or Method for batch analysis of Paired end WES data in a queue way. 0 Hello Everyone, Hope you are doing well. So the thing is I have a Exome Analysis Script pipeline which I have written in shell. Currently it does analysis of paired end samples one by…

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Bioinformatician at CDC

**Title: Bioinformatics III Company: Goldbelt, Incorporated Click the link below to see the details of the position: phh.tbe.taleo.net/phh04/ats/careers/requisition.jsp?org=GOLD&cws=37&rid=11195 Come join our team at CDC working to prevent and respond to healthcare-associated infections and antimicrobial resistance. ESSENTIAL JOB FUNCTIONS: Maintain, de-bug, execute and improve bioinformatics tools and pipelines used in-house, including…

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Why are my Nextflow processes not executing in parallel?

I have written a Nextflow script with three process: The first process takes a pair of fastq files and aligns with reference genome. The process writes the resulting SAM file into sam channel. Second process takes input from the sam channel and creates a BAM file from it, and writes…

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Principal Bioinformatics Scientist – Cell and Gene Therapy

Principal Bioinformatics Scientist – Cell and Gene Therapy Germany – Pharma The global Computational Biology and Digital Sciences (gCBDS) department is engaged in target discovery research and the application of innovative methods to resolve causative factors in disease progression. This is a great opportunity to lead computational projects in a…

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BIOINFORMATICIAN II

Apply at: uab.taleo.net/careersection/ext/jobdetail.ftl?job=T190159&tz=GMT-05%3A00&tzname=America%2FChicago A Bioinformatician II is needed to participate in research activities involved in the analysis of Next Generation Sequencing such as data derived from genomics and transcriptomics (bulk and single-cell sequencing) to the UAB Biological Data Science institutional core (www.uab.edu/cores/ircp/bds & Twitter page: twitter.com/UAB_BDS) . This position will…

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Online Workshop – Bioinformatics Pipeline Development with Nextflow (November 22-25, 2021)

Bioinformatics Pipeline Development with Nextflow How to manage your own data analysis pipelines using workflow management systems When? November 22-25, 2021 9 am – 5 pm (CET) Where? Online Link? www.ecseq.com/workshops/workshop_2021-10-Bioinformatics-Pipeline-Development-with-Nextflow-Online-Course.html Streamline your research through the development of reproducible analysis pipelines In a nutshell Learn the fundamental best-practices of bioinformatic…

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Serotiny hiring Data Scientist / Bioinformatics Scientist

About Serotiny Serotiny is a company that is engaged in the discovery of proteins for cell therapies. It focuses on such proteins as CARs (chimeric antigen receptors) for the treatment of cancers and genetic disorders. Job Description Description Serotiny invents multi-domain proteins for gene and cell therapies including genome editors…

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Champions Oncology hiring Bioinformatics Engineer in Rockville, MD, US

About Champions Oncology Champions Oncology, Inc. provides an end-to-end range of research and development solutions and services that improve the productivity of oncology drug development. Using both in vitro to in vivo testing platforms companies can leverage the expertise at Champions Oncology to help guide decision making for clinical development…

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Pacific Biosciences hiring Bioinformatics Software Engineer in United States

PacBio’s Application Software Group focuses on building solid, strategic value around our core data type – highly accurate, long read sequencing – by producing innovative software that unlocks genomics in ways never seen before. We’re growing an interdisciplinary team of bioinformatic experts to tackle some of the most interesting problems…

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How to pass custom software specific variables to nf-core/sarek nextflow pipeline?

How to pass custom software specific variables to nf-core/sarek nextflow pipeline? 0 I’m attempting to call whole genome variants using nf-core/sarek nextflow pipeline. In QC step there is an option that invokes trim_galore quality trimming, but i don’t know how to pass my custom adapters to be cut as well….

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Research Scientist Bioinformatics at Exscientia

We are looking to hire an experienced bioinformatician who specializes in the analysis of human NGS data. The Research Scientist Bioinformatics will lead the development and expansion of our in-house NGS capabilities together with data managers and software developers, while also carrying out project-specific analyses. Exscientia GmbH is a company…

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Senior Bioinformatics Data Engineer – GRAIL

GRAIL is a healthcare company whose mission is to detect cancer early, when it can be cured. GRAIL is focused on alleviating the global burden of cancer by developing pioneering technology to detect and identify multiple deadly cancer types early. The company is using the power of next-generation sequencing, population-scale…

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Verve Therapeutics hiring Bioinformatics Scientist/Engineer in Cambridge, Massachusetts, United States

Location Cambridge, MA The Company Verve Therapeutics is a biotechnology company created with a singular focus: to protect the world from heart disease. Founded by world-leading experts in cardiovascular medicine, human genetics, and gene editing, the company aims to develop transformative, once-and-done therapies for coronary heart disease. Verve’s gene-editing medicines…

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Solvuu hiring Bioinformatics Engineer in United States

Summary At Solvuu, we are building technology to revolutionize bioinformatics and data science. We are seeking an accomplished, self-motivated and ambitious bioinformatics engineer with a strong track record in developing, executing, and maintaining bioinformatics pipelines on AWS for biotech R&D. The successful candidate will have the opportunity to drive and…

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Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health

Job:Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health 0 You will be part of a team of molecular biologists, medical geneticists, and bioinformaticians working together to analyze new and archival clinical cases using high throughput sequencing. As one of a newer team of software engineers, you will have the unique opportunity…

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Champions Oncology Inc. Bioinformatics Engineer

About us Champions Oncology is a technology-enabled research organization that leverages an end-to-end range of research and development solutions to improve the productivity of oncology drug development. Using computational and experimental testing platforms, Champions Oncology improves decision making for effective therapeutic development. Our team is passionate and self-motivated working together…

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Head of Bioinformatics & Data Mining at HUMMINGBIRD BIOSCIENCE PTE. LTD. Singapore

About Hummingbird Bioscience Hummingbird Bioscience is an innovative clinical-stage biotech company focused on developing precision therapies against hard-to-drug targets to improve treatment outcomes. We harness the latest advances in systems biology and data science to better understand and solve the underlying causes of disease and guide development of our therapeutics. Enabled…

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Bioinformatics Software Engineer, Cancer Genomics Research Laboratory (req2036) job with Frederick National Laboratory

PROGRAM DESCRIPTION We are seeking an enthusiastic, creative, and collaborative bioinformatics software engineer to support pipeline development and analysis for our broad portfolio of genomic studies. If you have experience designing and deploying robust, reproducible, production-quality pipelines, then come join our talented team of bioinformaticians dedicated to understanding the genetics…

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