Category: python

Single cell RNA-seq analysis using a Galaxy interface

In this webinar, we will look at a Galaxy interface for single cell analysis. Specifically, we will run Scanpy (which would otherwise require Python programming skills) to analyse a Drop-seq dataset located in EMBL-EBI’s Single Cell Expression Atlas. Who is this course for? This webinar is aimed at individuals…

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Anyone could help me with cutadapt?

I’, trying to trim my primers off from Illumina sequences. I ‘ve amplified with: Diat_rbcL_F1 AGGTGAAGTAAAAGGTTCWTACTTAAA, Diat_rbcL_F2 AGGTGAAGTTAAAGGTTCWTAYTTAAA and Diat_rbcL_F3 AGGTGAAACTAAAGGTTCWTACTTAAA as Forward primers and Diat_rbcL_R1 5’CCTTCTAATTTACCWACWACTG 3’ (Reverse Complement: 3’CAGTWGTWGGTAAATTAGAAGG 5’) and Diat_rbcL_R2 5’CCTTCTAATTTACCWACAACAG 3’ (Reverse Complement: 3’CTGTTGTWGGTAAATTAGAAGG 5’) Reverse primers. First, I used PEAR to assembly paired reads…

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Computational Biology Trainer for VIB and ELIXIR Belgium

Description Posted Date 18 Oct 2021 Locations Ghent Center VIB Bioinformatics Core Type Bio IT Positions 1 About VIB and ELIXIR Belgium VIB is an entrepreneurial non-profit research institute with a clear focus on ground-breaking strategic basic research in life sciences and operates in close partnership with the five universities…

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How to include a Jmol Console Script in a Python Script

How to include a Jmol Console Script in a Python Script 0 I have created a python script and a Jmol Console Script. How can I load the Jmol Console Script into the Python Script? For example I have this Jmol Console Script: load ‘ligand_PDB_entry_prompt’ select water ; delete selected…

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autopkgtest failure with python-biopython 1.79+dfsg-1~0exp0 in experimental

Source: ncbi-acc-download Version: 0.2.7-1 Severity: important Tags: ftbfs Dear Maintainer, I am trying to assess the side effects of an upgrade of the package python-biopython to 1.79 to its reverse dependencies. Pseudo-excuses look alright, except for ncbi-acc-download [1]. [1]: release.debian.org/britney/pseudo-excuses-experimental.html [2]: ci.debian.net/data/autopkgtest/unstable/amd64/n/ncbi-acc-download/15982166/log.gz The full log [2] shows variations around the…

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11th Place Solution of Kaggle Global Wheat Detection

Solution Summary Our solution is based on the excellent MMDetection framework. We trained an ensemble of the following models: To increase the score a single round of pseudo labelling was applied to each model. Additionally, for a much better generalization of our models, we used heavy augmentations. Jigsaw puzzles In…

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Extracting named fasta sequences according to list with Biopython

Extracting named fasta sequences according to list with Biopython 0 Hi all, I’m trying to work out a quick script to extract a set of sequence fasta files from a multifasta and write them all to a new, single fasta file. To elaborate, I’ve got a proteome, and I want…

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Technical Support Specialist – BioInformatics – Invitae

POSITION SUMMARYThe Technical Support Specialist provides first level technical support on Invitae Somatic Oncology products from the Invitae office in Boulder, CO. This individual will escalate customer inquiries effectively, collect customer feedback and share this with internal teams to improve products. This individual will assist in coordinating activities for special…

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Bioinformatics Analyst Resume Summary

PERL HTML NET PYTHON. Bioinformatics analyst resume summary. Fast Easy to Build Free Resumes. Looking for a challenging position as a bioinformatics analysts in an organization that provides an opportunity towards professional growth and development Summary of Knowledge Skills. Professional Summary Highly skilled bioinformatics analyst with strong research history and…

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Technical Support Specialist – BioInformatics – Invitae (Formerly ArcherDx)

POSITION SUMMARYThe Technical Support Specialist provides first level technical support on Invitae Somatic Oncology products from the Invitae office in Boulder, CO. This individual will escalate customer inquiries effectively, collect customer feedback and share this with internal teams to improve products. This individual will assist in coordinating activities for special…

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Senior Computational Biologist I

Senior Computational Biologist I Company Overview At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence and improving outcomes. We’re treating cancer, one patient…

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SR. Bioinformatics Software Engineer – CMO

Job:SR. Bioinformatics Software Engineer – CMO – MSKCC 0 Senior Bioinformatics Engineer Company Overview At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence…

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IDR installation help

IDR installation help 0 I am seeking installation assistance. I have tried twice to install IDR. I first tried python 3 setup.py. install as instructed in the manual. I received the following error: [Errno 2] No such file or directory: ‘Library/Python/3.8/site-packages/test-easy-install-53208.write-test’ The installation directory you specified (via –install-dir, –prefix, or…

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Sr Staff Bioinformatics Scientist Emerging Solutions Jobs – JobsOffices

Job Brief We have a vacancy of Sr Staff Bioinformatics Scientist Emerging Solutions in our company, Illumina. This vacancy is based in Singapore Singapore. Please go through the job detail mentioned below. Position Title: Sr Staff Bioinformatics Scientist Emerging Solutions Company: Illumina Work Type: Full Time City of work: Singapore…

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Kaggle: Hands On Machine Learning , Sun, Oct 17, 2021, 2:00 PM

Note: below is what we will return to once the pandemic is over. Until then, we are online only. Not a tutorial session and will be not be led by anyone. We have consistently seen better results when people self-organize around common interests or skill levels. Guided materials are provided…

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Postdoc in Computational Population Genetics

DTU Health Tech seeks qualified candidates for a postdoc position in computational population genetics with a potential start date around December 1, 2021 (or according to mutual agreement). Responsibilities In this position, you will develop algorithms and computational methods to deal with the analysis of large datasets from modern and…

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Open source python tool for convert VCF files to JSON?

Open source python tool for convert VCF files to JSON? 1 Hello All, Can someone please point me to an open source python tool to convert VCF files from 1000 Genomes Project to JSON? Thanks, Saj json vcf python • 81 views • link updated 2 hours ago by 4galaxy77…

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Postdoctoral Fellow – Computational Analysis of Microbiome Data

We are seeking a highly motivated computational biologist to join the research group of Peer Bork within the Structural and Computational Biology Unit as a postdoctoral fellow. This bioinformatics group works on a wide range of topics with a current focus on microbiome analysis in ecosystems like the human gut…

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Bioinformatics Data Scientist – Menlo Park

Our client is a biotech startup company in Sunnyvale comprised of industry veterans. They are well funded and developing cutting edge technology for low cost, high-performance, mass scale solutions for DNA and protein-based diagnostic testing. They are seeking a highly motivated Senior Bioinformatics Scientist to join its advanced R&D group…

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How to create a custom Gene-to-GO mapping file for TopGO

Hi, So I’m trying to do some GO term enrichment analysis for some custom annotations, using the TopGO package in R. I’m following section 4.3 of the user guide, found here. The data needs to be in the following format (Note: file should have two, tab-delimited columns. The second of…

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Accesing reference genome from Genome database (ncbi) with biopython

Accesing reference genome from Genome database (ncbi) with biopython 1 Hello all, I would like to acces to the reference genome RefSeq UID given a taxonomy id using the Genome database with biopython. I will try to explain with images what I mean. I search in the Genome database using…

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Adjunct Faculty: Bioinformatics – Intro to Bioinformatics, Practical Computer Concepts for Bioinform – Baltimore

Johns Hopkins University Advanced Academic Programs Biotechnology Program Adjunct Faculty: Bioinformatics (Introduction to Bioinformatics, Practical Computer Concepts for Bioinformatics, Metagenomics) Institution Description: The Advanced Academic Programs (AAP) is a division of the Krieger School of Arts and Sciences at the Johns Hopkins University (JHU). As the nation’s oldest and one…

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Technical Support Specialist – BioInformatics at Invitae

POSITION SUMMARYThe Technical Support Specialist provides first level technical support on Invitae Somatic Oncology products from the Invitae office in Boulder, CO. This individual will escalate customer inquiries effectively, collect customer feedback and share this with internal teams to improve products. This individual will assist in coordinating activities for special…

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Accepted python-biopython 1.79+dfsg-1~0exp0 (source) into experimental

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Sat, 16 Oct 2021 12:30:51 +0200 Source: python-biopython Architecture: source Version: 1.79+dfsg-1~0exp0 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag…@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll…@debian.org> Changes: python-biopython (1.79+dfsg-1~0exp0) experimental; urgency=medium . * New upstream version * d/copyright: update years per…

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Kaggle Machine Learning & Data Science Survey 2021

This year Kaggle is once again launching an annual Data Science Survey Challenge, where we will be awarding a prize pool of $30,000 to notebook authors who tell a rich story about a subset of the data science and machine learning community. Welcome to Kaggle’s annual Machine Learning and Data…

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Will Python Take The Place Of R?

Well, years after the original question, I think this is worth a revisit. While I agree with Kevin’s answer fully, it’s interesting to see how python has progressed in recent years to catchup with R on the statistical and visualization side of things. As others have mentioned, numpy, pandas, and…

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BioSpace hiring Bioinformatics Scientist in Gaithersburg, Maryland, United States

We are currently searching for a Bioinformatics Scientist to provide support to the National Institutes of Health (NIH). This opportunity is a full-time position with MSC, and it is on-site in Gaithersburg, MD. Duties & Responsibilities Work independently and collaboratively to develop or optimize procedures that improve the throughput of…

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Bioinformatics Pipeline Developer job in Bluntisham, Huntingdonshire, Cambridgeshire

We are currently looking for a Bioinformatics Pipeline Developer to join a leading Biotech company based in the Cambridgeshire area. As the Bioinformatics Pipeline Developer you will be working on early cancer detection technology by supporting software developers and bioinformaticians KEY DUTIES AND RESPONSIBILITIES: Your duties as the Bioinformatics Pipeline…

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Development Scientist – Bioinformatics job with New England Biolabs

New England Biolabs (NEB) is seeking a computational scientist to work collaboratively with bench scientists. We will collaboratively construct software methods, analyze sequence results, and integrate data from instrumentation, ultimately creating high quality, rigorously tested, and provably excellent products. NEB provides an ideal working environment including high quality computational infrastructure,…

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Bioinformatics Data Engineer – Chennai

About Job CTC Undisclosed Job Location Chennai Experience 0 – 3 yrs Description Its a dynamic and results-oriented environment to work in but thats why we like it. There are countless opportunities to learn and grow, whether thats exploring new technologies in hackathons, or redefining the roles and work of…

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Get the snp id (rs) from the name of genes

Get the snp id (rs) from the name of genes 2 I have a list of genes and I want to see all available SNP related to those genes. so I need to get the SNP ID (rs) from the gene name by using python or R. snp rs gene…

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CrayLabs/smartsim-lammps: Examples of running LAMMPS with SmartSim

LAMMPS is a popular Molecular Dyanmics (MD) library written in C++. This repository integrates the SmartRedis C++ client into a fork (hopefully soon to be merged) of LAMMPS for online data analysis and visualization. An example of the interactive LAMMPS visualization with ipyvolume: Example: Lennard-Jones Melt Benchmark The melt/ directory…

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Is it possible to integrate shell scripts in snakemake

Is it possible to integrate shell scripts in snakemake 0 Hello, I need to integrate as inputs/outputs scripts written in python, R as well as shell scripts. I also would like to add to this list jupyter notebooks in constructing modular pipelines. While I found in the documentation about snakemake…

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DEXSeq prepare annotation script throws “object has no attribute ‘next'” for Ensemble GTFs

DEXSeq prepare annotation script throws “object has no attribute ‘next’” for Ensemble GTFs 0 @24764cda Last seen 23 hours ago United States Hi there, I am trying to run the dexseq_prepare_annotation.py script and the code keeps failing after parsing the first line of the gtf. Specifically, the code is failing…

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Bioinformatics Scientist, Discovery Biology – South San Francisco

Surrozen is a biotechnology company focused on discovering and developing novel regenerative medicines that unlock the powerful self-renewal properties of the body through specific control of the Wnt signaling pathway.Surrozen was founded by five leading-edge scientists: K. Christopher Garcia, Ph.D., Roel Nusse, Ph.D. and Calvin Kuo, M.D., Ph.D. from Stanford…

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Bioinformatics Scientist job with Hyper Recruitment Solutions (HRS)

We are currently looking for a Bioinformatics Scientist to join a leading biotech company based in the Cambridge area. As the Bioinformatics Scientist you will drive the development of computational tools and perform omics data analysis to support target identification and therapeutics development platforms KEY DUTIES AND RESPONSIBILITIES: Your duties…

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Bioinformatics Manager job with Hyper Recruitment Solutions (HRS)

We are currently looking for a Bioinformatics Manager to join a n exciting multi cultural biotech based in the Cambridge area. As the Bioinformatics Manager you will be responsible for leading and growing a highly skilled bioinformatics team KEY DUTIES AND RESPONSIBILITIES: Your duties as the Bioinformatics Manager will be…

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dabble-of-devops-bioanalyze/bioanalyze-docker-images: Docker Images for Jupyterhub + Bioinformatics

BioAnalyze Docker Images These docker images are built to use as a part of a full stack Bioinformatics Analysis Environment. Each image can be used on it’s own or as a part of a Jupyterhub Cluster. Each image is meant to be a full fledged ecosystem for Bioinformatics. Images: Bioinformatics…

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Codebase of deep learning models for inferring stability of mRNA molecules

Codebase of deep learning models for inferring stability of mRNA molecules, corresponding to the Kaggle Open Vaccine Challenge and accompanying manuscript “Predictive models of RNA degradation through dual crowdsourcing”, Wayment-Steele et al (2021) (full citation when available). Models contained here are: “Nullrecurrent”: A reconstruction of winning solution by Jiayang Gao….

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Staff Bioinformatics Research Engineer and Senior Manager – South San Francisco

As a Staff Bioinformatic Research Engineer and Senior Manager at Freenome, you will lead a team responsible for developing and deploying bioinformatics research on Freenome’s ML research platform. You will lead and manage a team of Research Engineers working large multi-omic datasets, including whole-genome sequencing of cell-free DNA, extracellular small…

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Postdoc In Bioinformatics Infection Immunology United Kingdom United Kingdom Jobs

Postdoc in Bioinformatics (Infection Immunology) United KingdomDirekt zum Inhalt springen Login Register MyTUM-Portal Technische Universität München 27.09.2021, Wissenschaftliches Personal Bioinformatician/Computational Biologist/Systems Immunologist (f/div/m) for two years initially with a possibility of extension to 5 and more years Requirements: o You have a PhD degree (or postgraduate degree MSc) in a…

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Dice hiring Bioinformatics Scientist in Rockville, Maryland, United States

Dice is the leading career destination for tech experts at every stage of their careers. Our client, Datanomics, is seeking the following. Apply via Dice today! Our client is looking to hire a Bioinformatics scientist who has experience with DNAnexus. You will work closely with Bioanalytical scientists to develop relevant…

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Staff Bioinformatics Scientist – Post-Diagnostic Applications – Menlo Park

www.grail.com . This position is with the post-diagnosis bioinformatics and data science team within GRAIL’s Bioinformatics and Data Science organization. We are establishing a team to monitor the dynamics of disease burden and to characterize disease biology with a focus on the post-diagnostic setting. We work with interdisciplinary scientists, clinicians,…

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Staff Bioinformatics Scientist – Post-Diagnostic Applications – Menlo Park

www.grail.com . This position is with the post-diagnosis bioinformatics and data science team within GRAIL’s Bioinformatics and Data Science organization. We are establishing a team to monitor the dynamics of disease burden and to characterize disease biology with a focus on the post-diagnostic setting. We work with interdisciplinary scientists, clinicians,…

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Bioinformatician / Research Software Engineer (m/f/d) – Leibniz-Institute DSMZ – Bioinformatics & Databases – job portal

  Published 14 October 2021 Closing Date 14 November 2021 Workplace Braunschweig, Inhoffenstraße 7B, Niedersachsen, Germany Category Position Duration Three years Job Start 01.01.2022 The Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany, offers a position asBioinformatician / Research Software Engineer (m/f/d)in full time. The position is not…

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Research Associate in Bioinformatics/Data Analysis (Fixed Term) – Job Opportunities

We are seeking a highly motivated full time Research Associate in Bioinformatics/Data analysis (grade 7) to join the Cambridge Centre for AI Medicine (CCAIM) directed by Prof Mihaela van der Schaar and co-directed by Prof Andres Floto You will be based in the Department of Medicine Molecular Immunity Unit based…

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Bioinformatics Scientist II – Redwood City

IDT is the leading manufacturer of custom oligonucleotides and proprietary technologies for genomics applications. Our work is complex and cutting-edge, and our team members are curious, creative thinkers who understand that good data drives smart decisions. At IDT, we realize that although science may be uniform, people are unique. We…

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Bioinformatics QA | Santa Clara, CA

Bioinformatics QA | Santa Clara, CA | Persistent Systems, Inc. Location: Start New Search: bioinformatics scientistamerican securitynext generation sequencingcomputational biologyassay developmentngsrochepython rgenomicsbioinformaticsbiostatisticsoriginsmolecular biologydnablueprintmachine learningvisualizationphysicshivphd Persistent Systems, Inc.Santa Clara, CA Full-time Experience in Next Generation Sequencing (NGS) Seeking a talented and tech-savvy Bioinformatics QA to join our North American security practice…

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Index of /~psgendb/local/biopython-1.55.old/Bio/AlignAce

Name Last modified Size Description Parent Directory   –   AlignAceStandalone.py 2012-02-03 12:02 2.3K   AlignAceStandalone.p..> 2010-10-07 10:28 2.3K   Applications.py 2010-10-07 10:28 2.5K   CompareAceStandalone.py 2012-02-03 12:02 1.1K   CompareAceStandalone..> 2010-10-07 10:28 1.1K   Motif.py 2012-02-03 12:02 8.7K   Motif.py.bak 2010-10-07 10:28 8.6K   Parser.py 2012-02-03 12:02 3.3K  …

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Looking for volunteer positions

Looking for volunteer positions 1 I am a Bioinformaticians (specialized in genomics) working for the NHS in a training position (called STP). This program allows me to do up to 6 weeks of work in an external lab/company/whatever in the UK or abroad. Some of my interests are programming, python,…

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Bioinformatics Analyst – New York

POSITION RESPONSIBILITIES: The person will:Utilize existing pipelines to process and analyze high-throughput sequencing data, including bisulfite sequencing data.Manage, organize all bioinformatics sequencing data in the lab. Including papillomavirus sequence, microbiome data, both 16S and other, and human genomic dataConstruct phylogenic treesThe individual will be responsible for downloading large Fastq, BAM…

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ACTREC MSc Bioinformatics Technician Recruitment

– Advertisement – ACTREC MSc Bioinformatics Technician Recruitment – Apply Now MSc Bioinformatics Technician Recruitment – Applications Invited. Bioinformatics Jobs. Interested and eligible applicants can check out all of the details on the same below: No. ACTREC/ADVT-94/2021 WALK-IN – INTERVIEWTECHNICIAN (BIOINFORMATICS)(ON PROJECT) Name of Post – Technician (Bioinformatics) No. of Posts –…

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Learn Biopython: Preliminary Step Toward Bioinformatics

MP4 | Video: h264, 1280×720 | Audio: AAC, 44.1 KHz, 2 Ch Genre: eLearning | Language: English + .srt | Duration: 32 lectures (2h 28m) | Size: 815 MB Performing the Daily Tasks of Bioinformatics What you’ll learn: The basics of Python and Biopython Requirements There are no requirements except…

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BioSpace hiring Bioinformatics Scientist in California, United States

Title: Bioinformatics Scientist Location: San Diego, CA, or Menlo Park, CA , or Remote Position Summary An emerging leader in next-generation sequencing technology is seeking a driven Bioinformatics Scientist to join the team! In this role, you will have the exciting opportunity to shape the development of a novel groundbreaking…

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BioSpace hiring Senior Bioinformatics Scientist in California, United States

Title: Senior Bioinformatics Scientist Location: San Diego, CA, or Menlo Park, CA , or Remote Position Summary An emerging leader in next-generation sequencing technology is seeking a driven Senior Bioinformatics Scientist to join the team! In this role, you will collaborate with scientists and engineers around the world to show…

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genomespace_file_browser_dev.xml | searchcode

genomespace_file_browser_dev.xml | searchcode PageRenderTime 20ms CodeModel.GetById 13ms app.highlight 3ms RepoModel.GetById 1ms app.codeStats 0ms /tools/genomespace/genomespace_file_browser_dev.xml bitbucket.org/kellrott/galaxy-central XML |…

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Dhinagaran-s/Kaggle-Competitions-1 – githubmemory

Description about repository: • This repository consists of all the competitions that I have taken part on Kaggle.• Datasets are provided in each of the folders above, and also the solution to the problem statements have been provided.• Kaggle Profile: www.kaggle.com/anujvyas Competition(s) with ranks: • Titanic: Machine Learning from Disaster…

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How to write a Python script to edit a .vcf file?

I am trying to update an older .vcf file with some new information so that it reflects the changes that have been implemented in the . The sample IDs have changed, as well as some of the formatting of the GT, DS, and GP information (e.g. changing forward slashes to…

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Statistical Geneticist – Cancer job with Paramount Recruitment

Statistical Geneticist – Cancer *Based in Oxford but flexible working options* This is a fantastic opportunity to join a rapidly growing biotechnology company who specialise in the development of innovative technologies, products and offerings for the benefit of cancer patients. They are looking for a skilled Statistical Geneticist to join…

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Postdoctoral Fellow in Biostatistics/Bioinformatics – Bethesda

Postdoctoral Fellow in Biostatistics/Bioinformatics Laboratory of Clinical Immunology and Microbiology (LCIM) National Institute of Allergy and Infectious Diseases (NIAID) National Institutes of Health (NIH) The Neuroimmunological Diseases Section (NDS) of LCIM, NIAID Division of Intramural Research (DIR) is seeking a bioinformatics postdoctoral researcher. The mission of NDS is to improve…

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Pacific Biosciences hiring Bioinformatics Scientist in San Diego, California, United States

Title: Bioinformatics Scientist Location: San Diego, CA, or Menlo Park, CA , or Remote Position Summary An emerging leader in next-generation sequencing technology is seeking a driven Bioinformatics Scientist to join the team! In this role, you will have the exciting opportunity to shape the development of a novel groundbreaking…

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Job: Principal Investigator – Bioinformatics

Education and Experience : – PhD with at least 5 years industrial/academic experience in bioinformatic and computational analysis of biological systems. – Experience in programming particularly Linux, Python, Java or R, to provide analytical tools for querying large sequence and relational databases. Familiarity with HP cluster computing in this context…

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[Solved] Please use the datasets given below and use sas or python codes to frame at least five questions and answer them.

Please use the datasets given below and use sas or python codes to… 1.     https://www.kaggle.com/gpreda/covid-world-vaccination-progress 2.     https://www.kaggle.com/ayushggarg/covid19-vaccine-adverse-reactions Sample question 1.     How much percentage of the population in the United States is to be vaccinated to increase the percentage of Covid-19 recovery cases? 2.     Are there differences in efficacy between the vaccine type in increasing…

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BioSpace hiring Bioinformatics Scientist, Discovery Biology in South San Francisco, California, United States

DescriptionSurrozen is a biotechnology company focused on discovering and developing novel regenerative medicines that unlock the powerful self-renewal properties of the body through specific control of the Wnt signaling pathway. Surrozen was founded by five leading-edge scientists: K. Christopher Garcia, Ph.D., Roel Nusse, Ph.D. and Calvin Kuo, M.D., Ph.D. from…

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Research Associate – Bioinformatics at USC

A Research Associate position is available in the lab of Dr. Serghei Mangul in the Titus Department of Clinical Pharmacy, School of Pharmacy at the University of Southern California. The Mangul lab aims to improve the techniques of bioinformatics in order to better understand the mechanisms of disease. This includes…

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How to merge exons based on gene ids?

Since this is still unanswered, I’ll post an R solution until someone is kind enough to answer with the requested biopython solution. Read the fasta file in. library(“Biostrings”) library(“tidyverse”) fasta <- readDNAStringSet(“test.fasta”) You’ll end up with a Biostrings object of the fasta file. > fasta DNAStringSet object of length 7:…

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MatchPointe Group Bioinformatics Scientist – Arc.dev

Bioinformatics Scientist Full Time Seeking a candidate to work in a rapid, iterative research environment at the interface of our analytics, molecular biology, and medical teams. You will use rigorous quantitative reasoning to analyze and design experiments that allow us to understand more deeply, troubleshoot, and improve our existing and…

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Bioinformatics Manager – Precision Biomarker Labs at Cedars-Sinai

Requisition # HRC0707785 Join us in releasing the power of precise proteomics! The Bioinformatics Manager manages and provides leadership for the overall achievement of bioinformatics and software pipelines for production quality across Precision Biomarker Laboratories (PBL), Dr. Van Eyk’s ACBRI lab, and the Cedars-Sinai Medical…

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Pacific Biosciences hiring Senior Bioinformatics Scientist in San Diego, California, United States

An emerging leader in next-generation sequencing technology is seeking a driven Senior Bioinformatics Scientist to join the team! In this role, you will collaborate with scientists and engineers around the world to show case the utility of the new and powerful sequencing instrument. You will be part of a computational…

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Yoh, A Day & Zimmermann Company hiring Bioinformatics NGS Data Analyst in Cambridge, Massachusetts, United States

needed for a contract opportunity for Yoh Scientific’s client located in the Cambridge, MA area. This position is with an American multinational pharmaceutical corporation that develops and produces medicines and vaccines for immunology, oncology, cardiology, endocrinology, and neurology. If you meet the requirements, please apply to this job. (Feel free…

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Seeking a motivated bioinformatician

Job:Seeking a motivated bioinformatician 0 The Nephrogene lab at the Department of Nephrology, Medical University of Vienna, is seeking a motivated bioinformatician for a full-time position (www.meduniwien.ac.at/nephrogene/). The research focus is in the area of alloimmunity in kidney transplantation with a strong focus on genetic donor recipient incompatibility and changes…

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Bioinformatics Scientist job with Aerotek

Bioinformatics Scientist Exciting opportunity to work for an early-stage, innovative biotech company, to build a pipeline of novel, T-cell receptor (TCR)-based therapeutics. £45-55k per annum Starting ASAP (ideally within 2 months) WFH / On-site in Oxford a few days per week Seeking an enthusiastic and talented…

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NGSeq/DHPGIndex: This tool is for compressing and indexing pan-genomes and genome sequence collections for scalable sequence and read alignment purposes.

General This tool is for compressing and indexing pan-genomes and genome sequence collections for scalable sequence and read alignment purposes. The pipeline can be deployed in cloud computing environment or in dedicated computing cluster. The tool extends the CHIC aligner gitlab.com/dvalenzu/CHIC with distributed and scalable features. DHPGIndex have been tested…

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Filter loom file using cell ids in R using seurat.disk or with loompy in python

Filter loom file using cell ids in R using seurat.disk or with loompy in python 1 Trying to filter loom file in R. I have done analysis with seurat and trying to add another layer with velocity analysis scvelo (python). I could probably also do it in python with loompy…

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Dice hiring Associate Director Bioinformatics in Boston, Massachusetts, United States

Dice is the leading career destination for tech experts at every stage of their careers. Our client, Warman O’Brien, is seeking the following. Apply via Dice today! A leading innovative Biopharma who are focussing on the development of single-cell technology that offers molecular analysis of cells without the use of…

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fasterq-dump only downloads certain runs?

fasterq-dump only downloads certain runs? 0 Hey all, I wrote a script in python that gets the SRR ids from a SRP id and then downloads all FASTQ files for every SRR. How can it only work on some SRRs? For example, SRP000124 provides these: SRR954969 SRR001030 and downloads the…

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Yale University Careers hiring Associate Research Scientist – Bioinformatics in New Haven, Connecticut, United States

The Yale Genomic Resource Facility is looking for a highly motivated bioinformatics scientist with a strong background in the analysis next-generation sequencing data, extensive experience in human genetics, and a keen interest in collaborating with investigators at Yale. The successful candidate will provide genomic analyses support and develop bioinformatics pipelines…

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senpai vs lammps – compare differences and reviews?

lammps Posts with mentions or reviews of lammps. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-24. 👀 Chem.py has started development 🎉 A python library for doing chemistry simulations!! It’s open-source too!!!! Is this just a…

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Extract variant consequence count from gnomad and patient VCF file

Hello, I have 2 types of VEP annotated VCF file – regular vcf and gnomad genome file. I would like to extract counts of both missense, synonymous, upstream and intron variants for each gene in each file. Output should be something similar to this: MHTFR: missense 23, intron 100, synonymous…

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The 2nd place solution of 2021 google landmark retrieval on kaggle.

The 2nd place solution of 2021 google landmark retrieval on kaggle. Environment We use cuda 11.1/python 3.7/torch 1.9.1/torchvision 0.8.1 for training and testing. Download imagenet pretrained model ResNeXt101ibn and SEResNet101ibn from IBN-Net. ResNest101 and ResNeSt269 can be found in ResNest. Prepare data Download GLDv2 full version from the official site….

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Bioinformatician | Chicago, IL | The University of Chicago

Bioinformatician | Chicago, IL | The University of Chicago Location: Start New Search: proteomicsremote work from homecomputational biologyvirologyresearch specialistresearch resultsresearch technicianpython rdieticiantitle researchgenomicspredictive analyticsreinsurancebiomedical researchbioinformaticshygienistcomputationalmolecular biologyimmunologydna The University of ChicagoChicago, IL Full-time Preferred Qualifications Education:Bioinformatics, Computational Biology, Computer Science, Mathematics, or a related fieldExperience: Experience in basic programming for bioinformatics…

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HFSP funded Bioinformatics Postdoc Position in Deciphering Mechanosensing in Archaea

The Protein Bioinformatics group led by Vikram Alva at the Max Planck Institute for Developmental Biology offers an HFSP funded Bioinformatics Postdoc Position in Deciphering Mechanosensing in Archaea (m/f/d, TV-L E13, 100%)     All cells employ intricate molecular machinery to respond to mechanical stimuli from their environment. While the…

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marco-mariotti/tiedpyranges: Extends the pyranges module with operations on joined genomic intervals (e.g. exons of same transcript)

GitHub – marco-mariotti/tiedpyranges: Extends the pyranges module with operations on joined genomic intervals (e.g. exons of same transcript) Files Permalink Failed to load latest commit information. Type Name Latest commit message Commit time Extends the pyranges module with operations on joined genomic intervals (e.g. exons of same transcript) Install with:…

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Job vacancy in Global Worldwide: Bioinformatics Scientist – Senior Scientist at Arcus Biosciences

Job details Job type full-time Full job description Bioinformatics scientist – senior bioinformatics scientist Arcus is seeking a scientist-srScientist that will work in a highly embedded, collaborative model with colleagues across the organizationCandidate will work closely with translational and biology research scientists in the development of novel therapeutics and biomarkers…

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Bioinformatician job with Volt | 1239582

I’ve partnered with a global biopharmaceutical company, who have developed a platform to provide clinical drug screens to optimise treatment decisions in patients within cancer, alongside a biobank of (PDC) models that enables them to offer screening to support pharmaceutical drug development. They’re looking for a Bioinformatician to develop, maintain…

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Research Scientist, Bioinformatics job with Gilead Sciences, Inc.

Research Scientist, BioinformaticsUnited States – California – Foster City Gilead Sciences, Inc. is a research-based bio-pharmaceutical company that discovers, develops and commercializes innovative medicines in areas of unmet medical need. With each new discovery and investigational drug candidate, we seek to improve the care of patients living with life-threatening diseases…

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Research Bioinformatician I – Applied Genomics Job Opening in Los Angeles, CA at Cedars-Sinai

JOB SUMMARY:Under close supervision, the Research Bioinformatician I performs general bioinformatics analysis and software support for projects involving in omics. The RBI will manage omic data including loading and querying data from database system and public repositories, and transform and merge multilevel omic data into user-friendly formats, assist in development,…

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Veracyte, Inc. hiring Bioinformatics Scientist in South San Francisco, California, United States

The Position We are seeking an exceptionally talented bioinformatics scientist to join our Data Analysis Team (DAT). This individual will be responsible for routine analysis using existing bioinformatic and statistical tools as well as the development and implementation of novel approaches. The successful candidate’s contribution will focus on developing and…

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Integrated Resources, Inc ( IRI ) hiring Bioinformatics NGS Data Analyst Bioinformatics NGS Data Analyst in Cambridge, Massachusetts, United States

Job Description: The Manager, Acoustic Data Scientist role is a USA/MA-based role. She/he is responsible for designing and building Client-based analytical platforms for one or more projects that will identify and develop scientific and technological solutions for validating and qualifying Client digital endpoints to measure the impact of therapeutic interventions…

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Bioinformatics Analyst – Atlanta, GA 30322

Job Description Discover Your Career at Emory University: Emory University is a leading research university that fosters excellence and attracts world-class talent to innovate today and prepare leaders for the future. We welcome candidates who can contribute to the diversity and excellence of our academic community. Description: Dedicated to discovering…

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Senior Bioinformatics Engineer job with Warman O’Brien

My client is a leading innovative Biopharma who are developing transformative T-cell receptor therapies to treat cancer and other immune-related diseases.   As the business continues to grow they are looking to add talented Bioinformatic Scientists and Engineers to their Translational Science team. If successful you will be joining a…

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Principal Scientist – Cardiometabolic Diseases job with Paramount Recruitment

Principal Scientist – Computational Biology for Cardiometabolic DiseasesPharma. Germany Embedded in BI’s growing Global Computational Biology and Digital Sciences (gCBDS) Unit you have an impact on reinventing Research & Development, thereby actively contributing to the discovery of breakthrough therapies that will increase human health.The global Computational Biology and Digital Sciences…

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Integrated DNA Technologies hiring Bioinformatics Staff Scientist in Coralville, Iowa, United States

IDT is the leading manufacturer of custom oligonucleotides and proprietary technologies for genomics applications. Our work is complex and cutting-edge, and our team members are curious, creative thinkers who understand that good data drives smart decisions. At IDT, we realize that although science may be uniform, people are unique. We…

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Research Logistician in Bioinformatics – Academic Positions

Reference : SF30548Internal and external offer until 8th of November 2021 For the “Louvain Institute of Biomolecular Science and Technology” (LIBST), of the Sciences and Technology Sector (SST)  Main working place :  Louvain-la-Neuve Full-time and permanent contractStarting date : as soon as possible   UCLouvain is the largest university of…

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Technical Lead, Bioinformatics – Invitae

Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people. Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry, by making clinical-grade genetic information affordable and accessible to guide…

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Trouble installing HiC-Pro

Trouble installing HiC-Pro 0 Hello, I am trying to install HiC-Pro on a slurm cluster but I am getting errors. I downloaded the Hi-C Pro repository to my system and created the HiC-Pro_v3.1.0 environment from the environment.yml file. I then ran the commands “make configure” and “make install”. I updated…

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How to create wall with specific length and angle, complex geometry – LAMMPS General Discussion

Hello all, I am trying to create various geometries, like Y shape with different angles or X shape. Is it possible to create that using fix wall/lj126, is there a way to limit the length of a fix wall/lj126 and change its angle?From reading the manual it seem it will…

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Bioinformatics Scientist in San Diego, California

The Genome Informatics group in the Research & Development organization at Illumina is seeking a talented computational scientist to help us develop novel informatics tools that will transform both individual and population-scale multi-modal data into novel clinical insights. Our team works in the intersection of clinical science and bioinformatics on a…

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kaggle for beginners | Trends72

                Skip to content October 8, 2021 admin 0 Comments Data Science, Great Lakes, Great Learning, great…

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Twist Bioscience Staff Bioinformatics Engineer, Biopharma

Twist Biopharma is seeking a Bioinformatics Engineer to develop and integrate workflows, analyses, and computational tools involved in the production and research of antibodies and proteins. While you have a broad interest in biotech and related scientific technologies, you also understand that computer science resources must be utilized to reach…

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