Category: qqplot

How to make Q-Q plots for different models at a single chart using R?

How to make Q-Q plots for different models at a single chart using R? 1 Hello everyone! I am trying to make a Q-Q plot to visualise p-values obtained from different models afterr runing GWAS analysis. The key thing is that I want to reflect p-values from the different models…

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Cool Bioinformatics Scripts With Python

You can use this script in two ways read tons of millions of P values from stdin # python zcat pval.txt.gz | qqplot.py -out test -title “QQ plot on the fly” # julia zcat pval.txt.gz | qqplot.jl –out test –title “QQ plot on the fly” warning : If you have…

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GitHub – Zilong-Li/BioScripts: Cool Bioinformatics Scripts

You can use make a QQ plot in the following ways. one-liner for reading tons of millions of P values from the pipe # python zcat pval.txt.gz | qqplot.py -out test -title “QQ plot on the fly” # julia (recommand to run it in the REPL) zcat pval.txt.gz | qqplot.jl…

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Cool Bioinformatics Scripts | PythonRepo

You can use this script in two ways read tons of millions of P values from stdin # python zcat pval.txt.gz | qqplot.py -out test -title “QQ plot on the fly” # julia zcat pval.txt.gz | qqplot.jl –out test –title “QQ plot on the fly” warning : If you…

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Dealing with P value inflation of SNPs identified by qqplot

Dealing with P value inflation of SNPs identified by qqplot 0 I’m attempting to call SNPs that changed in allele frequency in a population. The population was sequenced at two times (before and after a drought) using pooled-sequencing of the whole genome. Fisher exact tests identified 7 million SNPs, which…

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