Tag: adonis
Chronic Strongyloides stercoralis infection increases presence of the Ruminococcus torques group in the gut and alters the microbial proteome
Human ethics statement This study was approved by the Human Ethical Review Committee of Khon Kaen University, Thailand (HE641434) following the principles of the Declaration of Helsinki. Before stool samples were collected, participants were required to complete and sign written informed-consent forms. Participants and samples All samples came from residents…
Does the skbio PERMANOVA function have a pairwise option like in qiime2? – General Discussion
Hi all, I know how to run the basic skbio permanova code in python: import skbio as skbskperm=skb.stats.distance.permanova(dm, host_md_test, column=’Host1′, permutations=999) But I only get stats on the overall test. Is there a way to show the pairwise comparisons like in qiime2?I am trying to keep this in python because…
Leveraging 16S rRNA data to uncover vaginal microbial signatures in women with cervical cancer
1 Introduction Cervical cancer (CC) remains the fourth most common cancer in women worldwide, with 604,127 new cases in 2020 and more than 341,831 deaths, accounting for nearly 8% of all female cancer-related deaths annually (Sung et al., 2021). This common infection-related neoplasm and its premalignant precursor are caused by high-risk…
