Tag: ALOT

Building the protein-membrane system in CHARMM-GUI We are now ready to embed the protein structure in the membrane in the proper location and orientation and construct the membrane composition we desire. To do this, we utilized the CHARMM-GUI input Generator, a handy web-based tool to generate GROMACS inputs for the…

Given the previous experience on using YOLOv8 on Android through converting it from ONNX exported => Tensroflow => Tensorflow Lite (plus the realization on ditching tflite support object detection API and use plaint interpretor), there are following items that I am wondering if directly using PyTorch mobile would be a…

Hello , I have to do RNAseq analysis of human cancer cell lines , for that I need to index human genome , as a refrence genome. I index the human genome gff file from thr NCBI.. during some lecture I have heard that ncbi human genome file has some…

Phyloseq and Microbiome analyzed in R Data Import and Exploration There are a number of packages advanced in R that make microbiome analysis easy and erzeugt greater figures. At is by times an lot of overlap between this analyse and QIIME – and the choice is yours. Personally I consider…

I have graphics working in Vanilla JS WebR, now, and I’ll cover the path to that in two parts. The intent was to jump straight into ggplot2-land, but, as you saw in my previous post, WASM’d ggplot2 is a bear. And, I really didn’t grok what the WebR site docs…

Dear LAMMPS developers, With the growing use of machine learning and optimization techniques (that are powered by automatic differentiation Automatic differentiation – Wikipedia), and their adoption and use in the field of molecular modelling, I thought it could be worth discussing whether making LAMMPS – a very efficient, flexible, and…

Beginner in Data Science? Focus on Basics with Kaggle Titanic Dataset Start with The Tip of the Iceberg — Titanic Machine Learning Dataset on Kaggle For a beginner, starting a career in data science can be overwhelming. Whether it is showcasing your business acumen, programming skills, exploratory data analysis skills,…

Add Information to Protein Fasta Headers 1 Hi, I have protein fasta file whose headers look like ‘>evm.model.chr.9.52’. There are almost 30k+ proteins. I have performed functional annotations and also added every information to gene structure we get from EVM. The thing is, in that files I had columns so…

Filteration of uniquely mapped reads 2 Hello I have BAM-full file with reads mapped to “human and mouse” chromosome file. Now I would like to extract reads mapped only to “mouse” (means not mapped to human chromosome”. This is the protocol I am using : From BAM-full, extract reads mapped…

Download Galaxy Genome [Space Sim] Mod Varies with device for android apk & iphone ios 4.4 and up Galaxy Genome is an open world sci-fi space simulator. You can upgrade your ship and customize each component as you hunt, explore, fight, mine, smuggle, trade and survive in a brutal galaxy….

install pytorch in jetson nano Done! Getting Started with Jetson Nano In this tutorial, you will learn how to set up the NVIDIA ® Jetson ™ Nano and install everything you need to use the full power of the tiny embedded board. Git – Version Contol…

The -safe launch option will cause the game to launch with minimal video settings, in windowed mode and with a x resolution. This can be helpful for solving video configuration problems. Jonah’s O5 Application – Whitelist Applications – Werwolf This can be helpful for solving video configuration problems.  I finally…

I’ve let the server stay open so you can join it and test for yourself. Game Garry’s Mod. It’s just textures (and maps, if you need it) for use as an addon to Garry’s Mod. From hunting down everyday objects in Prop Hunt to strangling and trampling pigs in Open…

miRNAseq analysis not shown adapter sequence and huge N’s content 0 Hi there, This is my third time doing miRNA sequencing analysis, so i do not have huge experience on this… So, i have 18 human semen samples, (also no experience in this type samples) i have been reading alot…