Tag: ANGSD
South-to-north migration preceded the advent of intensive farming in the Maya region
Moreno-Mayar, J. V. et al. Early human dispersals within the Americas. Science 362, eaav2621 (2018). ADS PubMed Google Scholar Posth, C. et al. Reconstructing the deep population history of Central and South America. Cell 175, 1185–1197.e22 (2018). CAS PubMed PubMed Central Google Scholar Raghavan, M. et al. Genomic evidence for…
Genomic variation from an extinct species is retained in the extant radiation following speciation reversal
Vamosi, J. C., Magallon, S., Mayrose, I., Otto, S. P. & Sauquet, H. Macroevolutionary patterns of flowering plant speciation and extinction. Annu. Rev. Plant Biol. 69, 685–706 (2018). CAS PubMed Google Scholar Rhymer, J. M. & Simberloff, D. Extinction by hybridization and introgression. Annu. Rev. Ecol. Syst. 27, 83–109 (1996)….
GitHub – e-jorsboe/ANGSD-asso-scripts
GitHub – e-jorsboe/ANGSD-asso-scripts You can’t perform that action at this time. You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. Read more here: Source link
Regions File Format – ANGSD-wrapper/angsd-wrapper Wiki
ANGSD-wrapper prefers the regions file to be formatted as chr_name:start_position-end_position. Below, we will create a toy BED file as an example and show how we can go from BED file format to ANGSD-wrapper’s regions file format. Create toy BED file Let’s create an example BED file. You can run the…
