Tag: ascat

Interpreting ASCAT CNV output 1 Hello, I have two queries w.r.t ASCAT CNV data: How does one go about getting the total copy number for a given locus or chromosome from the ASCAT CNV.output results. What is the optimal way to filter the dataset to reduce the noise? I would…

Need help with IGV interpretation 0 Hello all, I wanted to confirm if this is a true deletion? based on what i can observe, there is a drop in coverage, and it is also supported by the red line within the reads. However, i am concerned if 1 read is…