Tag: aspera
Aspera: Command ‘ascp’ not found
Aspera: Command ‘ascp’ not found 1 I am trying to download files from the idr website using aspera. I am running the following command however I get the error Command ‘ascp’ not found. The ssh key exists and the file path is correct. ascp -TQ -l40m -P 33001 -i “path/to/key/asperaweb_id_dsa.openssh”…
Setting up Aspera Connect (ascp) on Linux and macOS
This tiny tutorial cover setting up Aspera Connect (binary is called ascp) which might be used to download sequencing data, e.g. with download links provided by sra-explorer.info, see also sra-explorer : find SRA and FastQ download URLs in a couple of clicks Setting up Aspera Connect is simple and was…
Creating local nt blast database : bioinformatics
Hi all, I’m trying to create a local nt blast database, my eventual goal is to create a subset based on a taxanomic group to be used on a cluster with limited storage space, its seems the only way to do this though is to start with the whole database…
Bioinformatics NGS Data Analyst-Remote at Mindlance
Job Description Title: Bioinformatics NGS Data AnalystDuration: 12 monthsLocation: Remote Job Description:POSITION SUMMARY• Key member within the clinical imaging line within the Digital Medicine & Translational Imaging group, Early Clinical Development• Support the clinical image data management and analysis POSITION RESPONSIBILITIES• Work with Imaging Lead, Information Management – Clinical Trial…
