Tag: AZ
Import a swagger file with bicep
I am using bicep templates to deploy an APIM instance and then running a module block to run the following provider, Microsoft.ApiManagement/service/apis to import an API with Operations into the APIM instance. When I use the property of value and use the value loadTextContent(‘{pathToFile}/swagger.json’) I am able to load the…
AstraZeneca hiring Associate Director, Bioinformatics, Oncology R&D in Gaithersburg, Maryland, United States
Gaithersburg, MD or Waltham, MAAstraZeneca is a global, science-led, patient-focused biopharmaceutical company. It is dedicated to discovering, developing, and delivering innovative, meaningful medicines and healthcare solutions for some of the world’s most serious diseases. At AstraZeneca Oncology, we are leading a revolution to redefine cancer care by pushing the boundaries…
6 biotech companies in Luxembourg making waves in the industry
One of the wealthiest countries in the world, Luxembourg is renowned for its gromperekichelcher (potato pancakes), fine wines and medieval castles. An economic powerhouse in Europe, the country’s healthtec sector is mainly focused on the manufacture of diagnostic and medical devices, while the biopharma industry, which accounts for 29 per…
Wilton Library Presents ‘Art/Place Artists’ in June Exhibition
**News Release Submitted by Wilton Library** May 18, 2023 Wilton Library is pleased to present the diverse works of “Art/Place Artists” in its June art exhibition, opening on Friday, June 2 with a reception from 6 to 7:30 p.m. Art/Place Gallery is celebrating 42 years as a not-for-profit artist run…
Bioinformatics Scientist Job Opening in Phoenix, AZ at Phoenix Childrens Hospital
EMAIL* UPLOAD YOUR RESUME By clicking Agree, I consent to our data usage policies as stated here By agreeing to submit your resume, you consent (in accordance with our Terms of Use and Privacy Policy) to: A) Salary.com storing your resume for purposes of providing you with the job posting…
AstraZeneca announces positive phase 3 results for Tagrisso combination in lung cancer
AstraZeneca (AZ) has announced positive results from a phase 3 trial evaluating Tagrisso (osimertinib) in combination with chemotherapy in certain lung cancer patients. The late-stage FLAURA2 trial enrolled 586 patients with locally advanced or metastatic epidermal growth factor receptor-mutated (EGFRm) non-small cell lung cancer (NSCLC). Patients were treated with Tagrisso…
r – coloring in ggplot2 for US map
Using ggplot2 in R I want to assign colors to the 48 contiguous states based on their rankings, which range from -2 to 2. States with negative rankings will be colored red, while those with positive rankings will be colored green. States with a ranking of 0 will be given…
Assessing the biogeography of marine giant viruses in four oceanic transects
Koonin EV, Dolja VV, Krupovic M, Varsani A, Wolf YI, Yutin N, et al. Global organization and proposed megataxonomy of the virus world. Microbiol Mol Biol Rev. 2020;84:e00061–19. Article CAS PubMed PubMed Central Google Scholar Wilhelm S, Bird J, Bonifer K, Calfee B, Chen T, Coy S, et al. A…
MvNormal much slower in pymc5 than pymc3? – v5
Hi there! I have a 30-member ensemble of simulations at nt=100 time steps. Each ensemble member is assumed to be the combination of some central response \mu and underlying noise. The noise is uncorrelated across ensemble members and has temporal covariance matrix \Sigma. In this example, I assume AR(1) noise,…
python – KeyError while printing trace in pymc3
I’m tring to perform the spectral unmixing technique with the MCMC algorithm. But I encountered a problem while I ran it. This is the part of the code I’m running: import pymc3 as pm import theano.tensor as tt import arviz as az “”” Perform the spectral unmixing through a MCMC…
AZ, Ionis hail phase 3 data for ATTR drug eplontersen
AstraZeneca have broken out the data they teased last month for transthyretin amyloidosis (ATTR) therapy eplontersen, showing that the drug was effective at slowing down disease progression in patients with polyneuropathy caused by the disease. The results of the NEURO-TTRansform trial were presented at the American Academy of Neurology (AAN)…
How Whole Exome Sequencing Improves Identification of People With Cancer Predisposition Syndromes
Among individuals who consented to whole-exome sequencing (WES) and were identified as carriers of predisposition genes for hereditary breast and ovarian cancer (HBOC) or Lynch syndrome (also known as hereditary nonpolyposis colorectal cancer or HNPCC), 39.2% would not have qualified for genetic screening under current guidelines. This conclusion is based…
AstraZeneca presents positive phase 3 results for Imfinzi regimen in lung cancer
AstraZeneca’s (AZ) Imfinzi has shown promising results when used before and after surgery in resectable early-stage non-small cell lung cancer (NSCLC), according to new phase 3 data presented at the American Association for Cancer Research Annual Meeting. Interim results from the AEGEAN study, which is assessing the PD-1/L1 inhibitor in…
PathogenDx Expands Reach of Its Multiplexed Molecular Testing Technology
SCOTTSDALE, AZ — PathogenDx (“PathogenDx” or “Company”), a leader in next-generation microarray technology for better health and safety, announced it has expanded the reach of its patented multiplexed molecular testing technology—Dynamic Dimensional Detection (D3 Array™)—beyond the cannabis and hemp sectors. The Company is bringing its D3 Array™, which addresses the challenges microarray…
Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis
Center for Statistical Genetics, Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA Joshua S. Weinstock, Gonçalo R. Abecasis, Thomas W. Blackwell, Matthew Flickinger, Colin Gross, Hyun Min Kang, Jonathon LeFaive, Jacob Pleiness, Albert Vernon Smith, Daniel Taliun, Peter VandeHaar, Jiongming Wang, Joshua S. Weinstock, Sebastian Zoellner, Thomas W. Blackwell, Goncalo R. Abecasis, Albert V. Smith & Hyun M. Kang Department of Pathology,…
Possible frequent multiple mitochondrial DNA copies in a single nucleoid in HeLa cells
Cells Human cervix epitheloid carcinoma HeLa cells (ECACC 93021013; RRID:CVCL_0030) were cultured at 37 °C in Dulbecco′s Modified Eagle′s Medium (DMEM) with 3 mM glutamine, 10% (v/v) fetal calf serum (FCS), 10 mM HEPES, 100 IU/ml penicillin, 100 μg/ml streptomycin, and 5 mM glucose in humidified air with 5% CO2. Human osteosarcoma 143B cells were purchased…
Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting
Handa IT, Aerts R, Berendse F, Berg MP, Bruder A, Butenschoen O, et al. Consequences of biodiversity loss for litter decomposition across biomes. Nature. 2014;509:218–21. Article CAS PubMed Google Scholar Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, et al. Minimum information about an uncultivated virus…
Health Sciences genome sequencers a leap forward for research
Finding when and where DNA changes as a disease progresses allows for better treatment of chronic, genetic-based diseases including cancer, diabetes, and neurological and developmental disorders. At the University of Arizona, genome sequencers are used across multiple disciplines. But the newest genome sequencer in the UArizona Health Sciences offers the…
Sanger Sequencing Market is expected to undergo a CAGR of 18.50%
Data Bridge Market Research analyses that the sanger sequencing market which was USD 1.92 billion in 2021, would rocket up to USD 7.47 billion by 2029, and is expected to undergo a CAGR of 18.50% during the forecast period 2022 to 2029. In addition to the market insights such as…
Efficient CRISPR-Cas13d-Based Antiviral Strategy to Combat SARS-CoV-2
Affiliations Expand Affiliations 1 Laboratory of Experimental Virology, Department of Medical Microbiology, Amsterdam UMC, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands. 2 Department of Molecular and Cell Biology, National Center of Biotechnology (CNB-CSIC), Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain. Free PMC article Item in…
rstudio – Replace all numerical values in a column into its corresponding state name in R
If this is your data head(df) state code state 1 01 .Alabama/AL 2 02 .Alaska/AK 3 04 .Arizona/AZ 4 05 .Arkansas/AR 5 06 .California/CA 6 08 .Colorado/CO head(st) ST 1 01 2 01 3 01 4 02 5 02 6 04 Via lapply data.frame(ST = gsub(“/.*|\\W”, “”, lapply(st$ST, function(x) df[x…
Extensive prevalence and significant genetic differentiation of Blastocystis in high- and low-altitude populations of wild rhesus macaques in China | Parasites & Vectors
Andersen LO, Stensvold CR. Blastocystis in health and disease: are we moving from a clinical to a public health perspective? J Clin Microbiol. 2016;54:524–8. Article CAS PubMed PubMed Central Google Scholar Hublin JSY, Maloney JG, Santin M. Blastocystis in domesticated and wild mammals and birds. Res Vet Sci. 2021;135:260–82. Article …
The genetic basis of endometriosis and comorbidity with other pain and inflammatory conditions
Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK Nilufer Rahmioglu, Michal Krassowski, Cecilia S. K. Cheuk, Cecilia M. Lindgren, Anne Ndungu & Krina T. Zondervan Oxford Endometriosis CaRe Centre, Nuffield Department of Women’s and Reproductive Health, John Radcliffe Hospital, University of Oxford, Oxford, UK Nilufer Rahmioglu, Michal Krassowski, Danielle Perro, Nura F. Topbas-Selcuki, Cecilia S. K. Cheuk, Stephen H….
Schizophrenia risk conferred by rare protein-truncating variants is conserved across diverse human populations
Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA Dongjing Liu, Dara Meyer, Brian Fennessy, Claudia Feng, Esther Cheng, You Jeong Park, Marysia-Kolbe Rieder, Steven Ascolillo, Agathe de Pins, Amanda Dobbyn, Emily Moya, Lillian Wilkins, John F. Fullard, Steven P. Kleopoulos, Panos Roussos & Alexander W. Charney Wellcome Sanger Institute, Hinxton, UK Claudia Feng Pamela Sklar Division of…
Donor-Derived Staphylococcus Iugdunensis Endocarditis of Transplanted Heart
FINAL DIAGNOSIS Donor-derived Staphylococcus lugdunensis endocarditis of transplanted heart HISTORY OF PRESENT ILLNESS A 56-year-old man presented as a transfer from an outside hospital with cardiogenic shock from nonischemic cardiomyopathy for consideration of advanced therapies. Prior to presentation, he had been experiencing worsening orthopnea, leg swelling, and dyspnea on exertion….
Beyond Biotech podcast 35: Rare Disease Day
As February 28 is Rare Disease Day, we have three guests on the podcast today all relevant to rare diseases. And they are Dan Mandell, CEO and co-founder of GRO Biosciences; Stefano Portolano, chief executive officer, Azafaros; and from Replay, Adrian Woolfson, executive chairman, president, and co-founder, and Lachlan MacKinnon,…
Accelerating Efficient Drug Discovery With the Power of AI
Register for FREE to listen to this article Thank you. Listen to this article using the player above. ✖ Want to listen to this article for FREE? Complete the form below to unlock access to ALL audio articles. The rise of artificial intelligence (AI) is beginning to…
bayesian – How is pymc3.Potential() handled during sampling? How exactly is theano.tensor.switch() evaluated?
If the question is actually a statistical topic disguised as a coding question, then OP should edit the question to clarify this. After the statistical content has been clarified, the question is eligible for reopening. I am new to probabilistic programming and having a great…
mRNA Vaccine Can Impair Blood Vessel Function, But It’s Minor and Short-lived | Shin
Photo bypixabay.com Mixing in a bit of fact is a convincing way to tell a lie. Recently, a few studies on mRNA vaccine safety in regard to cardiovascular health have been published, which if interpreted incorrectly, may be used to push the narrative of dangerous mRNA vaccines. Let’s understand what…
The global spectrum of plant form and function: enhanced species-level trait dataset
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Mivavotinib for Relapsed/Refractory B-cell Lymphoma (Updated) Video
0 views | February 1, 2023 Oncotarget published this research paper in Volume 14, entitled, “Spleen tyrosine kinase/FMS-like tyrosine kinase-3 inhibition in relapsed/refractory B-cell lymphoma, including diffuse large B-cell lymphoma: updated data with mivavotinib (TAK-659/CB-659)” by the researchers from the Division of Hematology and Oncology, Northwestern University Feinberg School of…
Former Portsmouth woman identified as victim in 52 year-old cold case
KINGMAN, AZ (WSAZ) – More than 50 years later, a Portsmouth woman was identified as the female victim in a 1971 cold case. Detectives with the Mohave County Sheriff’s Office have identified the woman as Colleen Audrey Rice, from Portsmouth, Ohio. In October 2021, the sheriff’s office requested public assistance…
Author Correction: Genomic basis for RNA alterations in cancer
European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK Claudia Calabrese, Nuno A. Fonseca, Lara Urban, Claudia Calabrese, Nuno A. Fonseca, Lara Urban, Liliana Greger, Nuno A. Fonseca, Lara Urban, Claudia Calabrese, Liliana Greger, Roland F. Schwarz, Oliver Stegle, Alvis Brazma, Alvis Brazma, Roland F. Schwarz & Oliver Stegle ETH Zurich, Zurich, Switzerland Natalie R. Davidson, André Kahles, Kjong-Van Lehmann, Natalie R. Davidson, André Kahles, Kjong-Van Lehmann, Stefan G. Stark, André Kahles, Kjong-Van Lehmann, Natalie R….
Author Correction: Pan-cancer analysis of whole genomes
Applied Tumor Genomics Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland Lauri A. Aaltonen Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK Federico Abascal, David J. Adams, Ludmil B. Alexandrov, Sam Behjati, Shriram G. Bhosle, David T. Bowen, Adam P. Butler, Peter J. Campbell, Peter Clapham, Helen Davies, Kevin J. Dawson, Stefan C. Dentro, Serge Serge, Erik Garrison, Mohammed Ghori, Dominik Glodzik, Jonathan Hinton, David…
Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
The Broad Institute of MIT and Harvard, Cambridge, MA, USA Esther Rheinbay, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Julian M. Hess, Ziao Lin, Jaegil Kim, Yosef E. Maruvka, Pratiti Bandopadhayay, John Busanovich, Nicholas J. Haradhvala, Kiran Kumar, Gordon Saksena, Steven E. Schumacher, Chip Stewart, Manolis Kellis, Michael S. Lawrence, Pratiti Bandopadhayay, Rameen Beroukhim, Gad Getz, Nicholas J. Haradhvala, Julian M. Hess, Manolis Kellis, Jaegil Kim, Michael S. Lawrence, Ziao Lin, Yosef E. Maruvka, Esther Rheinbay, Gordon Saksena, Steven…
PyMC3 Sampling with a model function that does not take array input natively – v3
I’m curious if any PyMC3 experts can point me the right direction concerning very complicated model functions. I’ve found the PyMC3 and Theano documentation overwhelming and have not yet found either documentation or an example that is close to my situation. Apologies for the length of this question, I’m not…
PyMC3 Normal with variance per column
One can pass an argument for the shape parameter to achieve this. To demonstrate this, let’s make some fake data to pass as observed, where we use fixed values for epsilon that we can compare against the inferred ones. import numpy as np import pymc3 as pm import arviz as…
python – Pymc3 install issues on windows 10
So I downloaded pymc3 (uninstalled and reinstalled a few times) and every time I try to import pymc3 into a jupyter notebook I get some kind of error. I am guessing that I am having an issue with how I am installing Pymc3, I followed this tutorial: github.com/pymc-devs/pymc/wiki/Installation-Guide-(Windows). After my…
bayesian – Samples from Conditional Posterior Distribution in Pymc3
Let us consider the following Hierarchical Bayesian model: $w \sim\ Beta(20, 20)$ $K = 6$ $a = w * (K – 2) + 1$ $b = (1 – w) * (K – 2) + 1$ $theta \sim\ Beta(a, b)$ $y \sim\ Bern(theta)$ The above is the example of figure 9.3…
bayesian – Samples from Marginal Posterior Distribution in Pymc3
Let us consider the following Hierarchical Bayesian model: $mu sim Beta(1, 1)$ $k sim Exponential(1)$ $a = k*mu$ $b = (1-mu) * k$ $theta sim Beta(a, b)$ $y sim Bern(theta)$ The above example is a simplification of the example in figure 2.19 in the book Bayesian Analysis with Python by…
USNLX Diversity Jobs
USNLX Diversity Jobs Page not found The page you are looking for, diversity.usnlx.com/phoenix-az/bioinformatics-scientist/266939EE4D784F5E819D44A61114A8C5/job/?vs=28, does not exist. If you found this page from a job link, then that job is expired. Where can you go from here? Read more here: Source link
Looking for help: error occured in simple linear model example – Questions
Thanks for your attention. Codes :import osimport numpy as npimport pandas as pdimport xarray as xrimport pymc3 as pmimport bambi import matplotlib.pyplot as pltimport arviz as azimport theanofrom numpy.random import default_rng %matplotlib inline%config InlineBackend.figure_format = ‘retina’ RANDOM_SEED = 8927rng = default_rng(RANDOM_SEED)az.style.use(“arviz-darkgrid”) size = 50true_intercept = 1true_slope = 2x = np.linspace(0,…
Genomic analysis on Galaxy using Azure CycleCloud
Cloud computing and digital transformation have been powerful enablers for genomics. Genomics is expected to be an exabase-scale big data domain by 2025, posing data acquisition and storage challenges on par with other major generators of big data. Embracing digital transformation offers a practically limitless ability to meet the genomic…
Very slow sampling. Still can’t find what is happening after checking FAQs – Questions
I was using Pycharm with Python 3.7.4 and I was trying to learn from this tutorial:docs.pymc.io/en/v3/pymc-examples/examples/generalized_linear_models/GLM.html After pip install pymc3, I imported it and with 3 warnings:import pymc3WARNING (theano.configdefaults): g++ not available, if using conda: conda install m2w64-toolchainWARNING (theano.configdefaults): g++ not detected ! Theano will be unable to execute optimized…
Frontiers | The cGAS-STING Pathway: A Promising Immunotherapy Target
Introduction Invaded by exogenous or endogenous pathogens, the host immune system will be activated accordingly to resist harm and maintain homeostasis, which includes innate immunity and adaptive immunity. As the first line of host immune defense, innate immunity plays a critical role in recognizing extracellular and intracellular pathogens (1, 2)….
Characterization and expression of DNA sequences encoding the growth hormone gene in African Pygmy Mouse (Mus minutoides)
Abstract We determined the nucleotide sequence of the growth hormone (Gh) gene in Mus minutoides, one of the smallest mammals, where was predicted to be distinct in the functional regions between M. minutoides and Mus musculus. To investigate the evolutionary characteristics of Gh in M. minutoides, we constructed a phylogenetic…
plotting roh from bcftools
plotting roh from bcftools 0 Heys, I am following this small tutorial on how to calculate ROHs from a vcf file using bcftools (samtools.github.io/bcftools/howtos/roh-calling.html) and I am getting this txt file: # This file was produced by: bcftools roh(1.10.2+htslib-1.10.2-3) # The command line was: bcftools roh -G30 –AF-dflt 0.4 my_file.vcf…
gmod advanced duplicator 2
Advanced Duplicator 2 is a Garry’s Mod addon which implements a tool similar to the Duplicator, but with many added features. Yeah no problem mate, thanks for the response. I’m done with gmod and I don’t take requests, so please stop spamming the comment section. “Originally published in single magazine…
rosetta fold vs alphafold 2
S. Both AlphaFold and Xu use simple folding engines L-BFGS (L- Broyden–Fletcher–Goldfarb– Shanno (BFGS)) and CNS (Crystallography and NMR System), respectively, i.e., improvements come from a better energy potential using distributional information. The phase problem is a problem, to the point that in the past decade, several structures, such as M-PMV…
The Current Molecular Treatment Landscape of Advanced Colorectal Cancer and Need for the COLOMATE Platform
Next-Generation Sequencing Utilizing Tumor Tissue and/or Blood The identification of actionable genomic alterations in tumors such as mCRC was once performed by Sanger DNA sequencing of tumor DNA that was extracted from fixed paraffin-embedded tumor tissue, but this has now been replaced by next-generation sequencing (NGS), which allows for larger-scale…
INanoBio Announces Successful Development of Novel Nanopore Transistor Prototype, a Step Towards Ultra-Fast DNA Sequencing
INanoBio Makes Strides Towards Ubiquitous Point-of-Need DNA Sequencing SCOTTSDALE, Ariz.–(BUSINESS WIRE)– INanoBio, a startup developing early stage disease diagnostics by combining semiconductor nanotechnology with biotechnology and machine learning, today announced it has successfully fabricated initial prototypes of its novel Field Effect Nanopore Transistor (FENT) device. FENT is INanoBio’s proprietary technology,…