Tag: barplot

  This article shows several alternatives on how to plot a table object in R programming. The article will consist of the following information: Here’s how to do it!   Creating Example Data Have a look at the example data below: x <- c(letters[1:4], letters[2:4], “d”) # Create example vector…

Distribution of nitrogen-cycling pathways in groundwater Differences in nitrogen-cycling processes based on oxygen and nitrate concentrations Sixteen metagenomes (Table S4) were obtained from duplicate wells at four sites (A–D) from two unconfined alluvial aquifers (Canterbury, Fig. S1). These sites encompassed varied nitrate (0.45–12.6 g/m3), DO (0.37–7.5 mg/L), and dissolved organic carbon (DOC) (0–26 g/m3)…

Cell-type annotation scRNA-seq data were filtered to discard low-quality cells and doublets (Supplementary Fig. 1, Extended Data Fig. 1 and Methods). Supervised clustering (Reference Component Analysis v2 (RCA2)) at low resolution grouped cells into 11 major cell types (Extended Data Fig. 1). To identify epithelial cell subtypes, we initially analyzed…

Hi i want to reorder barplot according to class. This ggplot code does not appear in the order of classes when displayed as a plot. Can you please let me know what I am missing? families <- tibble::tribble(~supp, ~class, ~dose, ~len, ~sd,“CON”, “Firmicutes”, “Lachnospiraceae”, 4.97, 1.73,“CON”, “Bacteroidota”, “Bacteroidales RF16 group”,…

Introduction Lung cancer is the major leading cause of tumour-related deaths throughout the world, while lung squamous cell carcinoma (LUSC) as the second most common histological type of lung cancer.1 Each year, almost 1.8 million people are diagnosed with lung cancer worldwide and 400,000 of these die from LUSC.2,3 Due to…

  In this tutorial, I’ll demonstrate how to annotate significance levels to a ggplot2 plot using the ggsignif package in the R programming language. Table of contents: Here’s how to do it:   Example 1: Draw Boxplot with Significance Stars The following R code illustrates how to create a box-and-whisker…

Cluster Profiler output not the same as Enrichr output 0 @angkoo-23537 Last seen 18 hours ago United Kingdom Hi there, I have am getting different outputs after running enrichGO on cluster profiler when I put the same genes into enrichR (by Maayan Lab) website. Example here using Biological Process 2021…

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I like Allan Camerons approach best. Here is what I have tried to provide as an alternative using annotations: library(ggplot2) ggplot(data, aes(x=name, y=value))+ annotate(“rect”, xmin = 0.5, xmax = 4.5, ymin = 0, ymax = 5, fill = “red”, alpha = 0.2)+ annotate(“rect”, xmin = 0.5, xmax = 4.5, ymin…

When I make the following, I want just to compare the three years not to sum them. And the actual code sums them even if I don’t tell it to do it. Any clue? hoteles <- tibble::tribble( ~Hotel , ~Año, ~Ingresos , “Hawaiian Club” , “1993”, 450000 , “Hawaiian Club”…

I need the r files that run on R studio with any sample data for The k-means clustering algorithm Apriori Algorithm Simple Linear Regression Multiple Linear regression Logistic Regression Decision trees Naïve Bayes using SVM Building and Evaluating an ARIMA Model Text Analysis that uses TermDocumentMatrix() and finds the most…

Introduction Intestinal ischemia-reperfusion (II/R) injury is a severe clinical complication common in the Intensive Care Unit (ICU). It is associated with high morbidity and mortality.1 Usually, this problem is followed by various causes, including sepsis, shock, trauma, and so on.2 Intestinal ischemia-reperfusion injury destroys intestinal tissue and impairs the function…

Visualization of GO results using enrichplot 0 Hello I am doing gene set analysis on DNA methylation microarray data (Illumina 450k and EPIC), and use the missMethyl package to do the analysis, and want to keep using that package because it accounts for some biases that occur when extracting the…

Doubts with Stacked barplot using R ggplot2 0 Hello! I am trying to plot some data using R but I am having some problems doing it. I have a data frame with two columns (genes and and type of mutation) and looks like: genes variant MLH1 Intronic ATR 5′ UTR…

problem in y axis in barplot+ggplot 1 Hi every body I want to plot barplot using ggplot. my data is: X1 X2 2367 تولید کل 23 هندوانه 11 خیار 97 گوجه 0 سیب 107 پیاز 2 کلزا 0 سویا 2 آفتابگردان 748 چغندرقند 0 پنبه 22 نخود 6 عدس 29…