Tag: baseml
How to identify Substitution rate is per time unit in baseml
Dear members, I am new to this world of baseml. I am following the tutorial provided in www.fish-evol.com/mcmctreeExampleVert6/text1Eng.html. However, I am uanble to detect “Substitution rate is per time unit” in my mld file. I am writing baseml.ctl and my output file result below. Please help me how to calculate…
calculate kappa (transition/transversion) for each tree branch
I wish to estimate transition/transversion ratio per each tree branch. I tried PAML baseml but got estimations only for some of the my MSAs. Can someone recommend another way to calculate it? Thanks seqfile = seq treefile = tree outfile = out noisy = 9 0,1,2,3: how much rubbish on…
