Tag: bdgcmp

difference between treat_pileup and bdgcmp fold enrichment tracks macs2

difference between treat_pileup and bdgcmp fold enrichment tracks macs2 0 Hello, I created bigwig file from a treat_pileup.bdg file generated by macs2 and also used treat_pileup.bdg and control_lambda.bdg with macs2 bdgcmp. Here is my codes; macs2 callpeak -t sample.bam -c sample_input.bam -g hs -f BAM -q 0.001 –bdg –outdir /folder…

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MACS2 BDGCMP

MACS2 bdgcmp for two bedgraph peak callingKeep it as 1.0 or default in most … bdgcmp Deduct noise by comparing two signal tracks in bedGraph. Source link

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Theuniqueact.com – macs2 bdgdiff for calling differential binding events .

MACS2 bdgcmp for two bedgraph peak calling Mar 16, 2015 · I have the data in Bedgraph. MACS2 can use bedgraph as input for peak calling. Source link

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