Tag: bdgcmp

Calculate scores using certain method by comparing a bedGraph file from treatment and a file from control representing local bias

bdgcmp(1) Calculate scores using certain method by comparing a bedGraph file from treatment and a file from control representing local bias SYNOPSIS bdgcmp <-t TREATMENT.BEDGRAPH> <-c CONTROL.BEDGRAPH> <-o OUTPUT.BEDGRAPH> [-m METHOD] DESCRIPTION Calculate scores using certain method by comparing a bedGraph file from treatment and a file from control representing…

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Butterfly eyespots evolved via cooption of an ancestral gene-regulatory network that also patterns antennae, legs, and wings

Although the hypothesis of gene-regulatory network (GRN) cooption is a plausible model to explain the origin of morphological novelties (1), there has been limited empirical evidence to show that this mechanism led to the origin of any novel trait. Several hypotheses have been proposed for the origin of butterfly eyespots,…

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difference between treat_pileup and bdgcmp fold enrichment tracks macs2

difference between treat_pileup and bdgcmp fold enrichment tracks macs2 0 Hello, I created bigwig file from a treat_pileup.bdg file generated by macs2 and also used treat_pileup.bdg and control_lambda.bdg with macs2 bdgcmp. Here is my codes; macs2 callpeak -t sample.bam -c sample_input.bam -g hs -f BAM -q 0.001 –bdg –outdir /folder…

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MACS2 BDGCMP

MACS2 bdgcmp for two bedgraph peak callingKeep it as 1.0 or default in most … bdgcmp Deduct noise by comparing two signal tracks in bedGraph. Source link

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Theuniqueact.com – macs2 bdgdiff for calling differential binding events .

MACS2 bdgcmp for two bedgraph peak calling Mar 16, 2015 · I have the data in Bedgraph. MACS2 can use bedgraph as input for peak calling. Source link

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