Categories
Tag: BiGG
A transcriptomic taxonomy of mouse brain-wide spinal projecting neurons
Animals All experimental procedures were performed in compliance with animal protocols approved by the Institutional Animal Care and Use Committee at Boston Children’s Hospital (Protocol no. 20-05-4165 R). Mice were provided with food and water ad libitum, housed on a 12-hour light/dark schedule (7 a.m.–7 p.m. light period) with no more than five mice…
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Mouse breeding and husbandry All experimental procedures related to the use of mice were approved by the Institutional Animal Care and Use Committee of the AIBS, in accordance with NIH guidelines. Mice were housed in a room with temperature (21–22 °C) and humidity (40–51%) control within the vivarium of the AIBS…
How the Nobel-winning mRNA vaccines helped us tame the pandemic | Health and Wellness News
COVID-19 became the first ever pandemic during which a vaccine could be quickly developed and deployed to prevent infections and deaths. Never-before approved mRNA vaccines were used on humans and worked. The first two vaccines to be approved and deployed with this technology were rolled out by Pfizer and Moderna…
EggNOG mapper annotation results
I am new with Bioinformatics, I used eggnog to annotate a group of protein sequences The results obtained with eggnog are not very well explained, how do you interpret these results? Query | seed_ortholog | evalue | score | eggNOG_OGs | max_annot_lvl | COG_category | Description | Preferred_name | GOs…
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package | Algorithms for Molecular Biology
The model of [20] considers loops as freely jointed charged chains and helices as parallel rods interacting via Debye-Hückel potentials and uses Manning’s framework to model counter-ions condensation. This results in distinct types of correction terms from loops and helices, which we describe separately in the following. In either case…
Identification of a deep-branching thermophilic clade sheds light on early bacterial evolution
Lieph, R., Veloso, F. A. & Holmes, D. S. Thermophiles like hot T. Trends Microbiol. 14, 423–426 (2006). Article CAS PubMed Google Scholar Hedlund, B. P. et al. Uncultivated thermophiles: current status and spotlight on ‘Aigarchaeota’. Curr. Opin. Microbiol. 25, 136–145 (2015). Article CAS PubMed Google Scholar Kato, S. et…
Research software engineer supporting open-source bioinformatics software and services (0.6 fte) – Maastricht University – job portal
Sign in Sign up EN All jobs Research software engineer supporting open-source bioinformatics software and services (0.6 fte) Published Deadline Location today 8 Sep Maastricht Do you want to play a role in creating the connection between ICT and Biology? Maastricht University is looking for a research software engineer to…
Bioinformatics Programmer and Integration Manager – 110035 job in Oakland, California at UC San Diego
Bioinformatics Programmer and Integration Manager – 110035 Job Description Extended Deadline: Mon 6/26/2023 UC San Diego values equity, diversity, and inclusion. If you are interested in being part of our team, possess the needed licensure and certifications, and feel that you have most of the qualifications and/or transferable skills for…
Bioinformatics Programmer and Integration Manager
#110035 Bioinformatics Programmer and Integration Manager Extended Review Date: Mon 6/26/2023 Job posting will remain open until a suitable candidate has been identified. The Bioinformatics Programmer and Integration manager within CMI will undertake advanced programming research projects focused on understanding the impact of nucleic acids or other biological molecules (metabolites,…
F_B0. [IMPL] Cifar10 CNN Keras – TypeA – EN – Deep Learning Bible – 2. Classification
Github : github.com/RichardMinsooGo/Bible_2_F_CNN Source Code : B0_Cifar10_CNN_Keras_TypeA.py The baseline code for this implementation is as follows. You can understand it by comparing it with the code below. In the pseudocode below, there are changes only in Line 2 and Line 7. Please see the part marked with red color in…
Parser EggNOG-mapper annotation output using pythom
Hello Biostars, I used to use python but I’m not good at it thus I need your help. I’m trying parsing a tab file resulting from the functional annotation using EggNOG-mapper. here. I want to explore all the essential information and make some plots from this data. what I did…
Researchers report on a genome-wide reconstruction of human microbes to develop personalized therapies
In a recent study published in Nature Biotechnology, researchers reported on AGORA2, an expansion of their previously published resource, AGORA, both resources of genomewide metabolic reconstructions of human intestinal microbes. Study: Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine. Image Credit: nobeastsofierce/Shutterstock Human intestinal microbes synthesize biological metabolites,…