Tag: Bio-DB-HTS
VEP/ CADD error – ERROR: Assembly is GRCh38 but CADD file does not contain GRCh38 in header.
Dear Biostars, I am having a confusing issue with my CADD plugin. This is confusing because when I run VEP for my whole trio – all the plugins work fine. However when I try to run CADD for individual – pivoted files – it no longer does and I get…
BioPerl 1.7.2-GCCcore-8.2.0-Perl-5.28.1 (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)
BioPerl 1.7.2-GCCcore-8.2.0-Perl-5.28.1 There is a newer version of BioPerl Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. Accessing BioPerl 1.7.2-GCCcore-8.2.0-Perl-5.28.1 To load the module for BioPerl 1.7.2-GCCcore-8.2.0-Perl-5.28.1 please use this command…
Fail to install Ensembl VEP
Fail to install Ensembl VEP 2 Hello I have been encounter some issues on installing the Ensembl VEP. I am using Ubuntu 20.04 system, with the newest perl v5.34. perl -MBio::Root::Version -e ‘print $Bio::Root::Version::VERSION,”n”‘ 1.006924 However, when I install the VEP, it failed. Hello! This installer is configured to install…
Bio-DB-HTS installation and ensembl-vep
Bio-DB-HTS installation and ensembl-vep 0 I want to use ensembl-vep with custom annotation. In order to use gff file I need to have library Bio-DB-HTS installed. I downloaded Bio-DB-HTS and used Build.PL with no errors. When I try to install ensembl-vep it still gives an error asking for Bio-DB-HTS library….
