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Tag: birchhomedir
Index of /~birch/birchhomedir/dat/tGDE/GDEHELP-linux-intel/dat/GDE/GDEHELP-solaris-sparc/dat/boxshade
Name Last modified Size Description Parent Directory – box_dna.grp 1998-12-15 19:27 73 box_dna.par 1998-12-15 19:27 5.2K box_dna.sim 1998-12-15 19:27 659 box_pep.grp 1998-12-15 19:27 385 box_pep.par 1998-12-15 19:27 5.4K box_pep.sim 1998-12-15 19:27 658 clust160.grp 1998-12-15 19:27 434 clust160.sim 1998-12-15 19:27 708 …
Index of /~birch/birchhomedir/dat/tGDE/GDEHELP-linux-x86_64/dat/dGDE/GDEHELP-osx-x86_64/doc/clustalw
Name Last modified Size Description Parent Directory – README 1997-04-18 05:21 4.3K clu2ig.asc 1992-08-13 15:12 1.0K clustalv.asc 1996-03-15 09:29 74K clustalw.asc 1996-03-20 05:53 27K clustalw.doc 2001-11-09 04:45 33K clustalw.ms 2001-11-09 04:45 43K clustalw_help 2001-11-09 04:45 31K clustalx_help 1997-05-19 16:54 51K …
Index of /~birch/birchhomedir/dat/mGDE/GDEHELP-osx-x86_64/dat/GDE/GDEHELP-solaris-amd64/dat/fasta2
Name Last modified Size Description Parent Directory – blosum50.mat 2008-04-13 19:29 2.1K bovgh.seq 2008-04-13 19:29 2.5K bovprl.seq 2008-04-13 19:29 1.0K codaa.mat 2008-04-13 19:29 1.0K dna.mat 2008-04-13 19:29 489 egmsmg.aa 2008-04-13 19:29 1.3K gonnet.mat 2008-04-13 19:29 952 idnaa.mat 2008-04-13 19:29 1.0K …
Index of /~psgendb/birchhomedir/dbbias/lengths
Name Last modified Size Description Parent Directory – bar 2003-09-22 16:44 3.4K bar00001 2003-09-22 16:45 3.7K bar00002 2003-09-22 16:45 3.5K bar00003 2003-09-22 16:45 3.8K bar00004 2003-09-22 16:45 3.4K bar00005 2003-09-22 16:46 4.2K bar00006 2003-09-22 16:46 3.7K bar00007 2003-09-22 16:46 3.7K …
Index of /~psgendb/birchhomedir/java/Mesquite_Folder/examples/Correlation
Name Last modified Size Description Parent Directory – 00-introduction.nex 2017-09-10 13:17 1.5K 00a-FelsensteinsCont..> 2017-09-10 13:17 13K 00b-pagel94Hominids.nex 2018-05-04 16:44 11K 00c-pairwiseIntro.nex 2017-09-10 13:17 1.7K 01-pairwise.nex 2017-09-10 13:17 13K 02-pairwiseFig2(1).nex 2017-09-10 13:17 8.6K 03-pairwiseFig2(2).nex 2017-09-10 13:17 8.5K 04-pairwiseFig2(3).nex 2017-09-10 13:17 8.5K …
Index of /~psgendb/birchhomedir/tutorials/bioLegato/getgenome
Name Last modified Size Description Parent Directory – ExportSerArbView.png 2016-12-12 11:41 18K Last.html 2023-07-14 11:42 11K Mauve.html 2023-07-14 11:42 19K MauveAlignWindowSerA..> 2016-12-11 18:25 63K MauveAlignWindowSerA..> 2016-12-12 10:25 59K MauveAlignWindowSerA..> 2016-12-12 10:42 33K MauveProgressSerArb.png 2016-12-11 18:23 25K MauveReadSerArb.png 2016-12-11 18:15 16K …
Index of /~psgendb/birchhomedir/admin/launchers/biolegato.app/Contents/Resources/pkg/transrate/bin
Name Last modified Size Description Parent Directory – bam-read 2016-06-06 08:37 5.4M libgcc_s.so.1 2019-03-08 21:07 89K libgomp.so.1 2019-03-08 21:07 83K liblzma.so.0 2019-03-08 21:07 132K libm.so.6 2019-03-08 21:07 582K libtbb.so 2019-03-08 21:07 20 libtbb.so.2 2019-03-08 21:07 4.5M libtbbmalloc.so 2019-03-08 21:07 26 …
Index of /~psgendb/birchhomedir/FTP/doc/local/bin-linux-x86_64
Name Last modified Size Description Parent Directory – Translate 2003-02-20 12:39 111K caf2caf 2010-11-27 18:22 4.6M caf2fasta 2010-11-27 18:22 4.6M caf2gbf 2010-11-27 18:22 4.6M caf2html 2010-11-27 18:22 4.6M caf2tcs 2010-11-27 18:22 4.6M caf2text 2010-11-27 18:22 4.6M convert_project 2010-11-27 18:22 4.6M …
Index of /~psgendb/birchhomedir/public_html/doc/pkg/samtools/test/markdup
Name Last modified Size Description Parent Directory – 1_name_sort.expected..> 2017-08-08 03:03 0 1_name_sort.expected..> 2017-08-08 03:03 65 1_name_sort.sam 2017-08-08 03:03 9.4K 2_bad_order.expected..> 2017-08-08 03:03 3.0K 2_bad_order.expected..> 2017-08-08 03:03 39 2_bad_order.sam 2017-08-08 03:03 10K 3_missing_mc.expecte..> 2017-08-08 03:03 58 3_missing_mc.expecte..> 2017-08-08 03:03 77 …
Index of /~psgendb/birchhomedir/R/x86_64-redhat-linux-gnu-library/3.4/BiocParallel/html
Name Last modified Size Description Parent Directory – 00Index.html 2018-08-29 08:43 23K BatchJobsParam-class..> 2018-08-29 08:43 8.4K BiocParallel-package..> 2018-08-29 08:43 1.3K BiocParallelParam-cl..> 2018-08-29 08:43 9.2K DoparParam-class.html 2018-08-29 08:43 4.0K MulticoreParam-class..> 2018-08-29 08:43 19K R.css 2018-08-29 08:43 1.3K SerialParam-class.html 2018-08-29 08:43 3.2K …
Index of /~psgendb/birchhomedir/R/x86_64-redhat-linux-gnu-library/3.4/bit64/html
Name Last modified Size Description Parent Directory – 00Index.html 2018-08-29 08:40 34K R.css 2018-08-29 08:40 1.3K as.character.integer..> 2018-08-29 08:40 2.5K as.data.frame.intege..> 2018-08-29 08:40 1.9K as.integer64.charact..> 2018-08-29 08:40 2.2K benchmark64.data.html 2018-08-29 08:40 1.8K benchmark64.html 2018-08-29 08:40 9.1K bit64-package.html 2018-08-29 08:40 68K …
Index of /~psgendb/birchhomedir/BIRCHDEV/dat/mesquite/examples/Correlation
Name Last modified Size Description Parent Directory – 00-introduction.nex 2017-09-10 13:17 1.5K 00a-FelsensteinsCont..> 2017-09-10 13:17 13K 00b-pagel94Hominids.nex 2018-05-04 16:44 11K 00c-pairwiseIntro.nex 2017-09-10 13:17 1.7K 01-pairwise.nex 2017-09-10 13:17 13K 02-pairwiseFig2(1).nex 2017-09-10 13:17 8.6K 03-pairwiseFig2(2).nex 2017-09-10 13:17 8.5K 04-pairwiseFig2(3).nex 2017-09-10 13:17 8.5K …
Index of /~psgendb/birchhomedir/python/biopython-1.68/Tests/Exonerate
Name Last modified Size Description Parent Directory – exn_22_m_affine_loca..> 2016-08-25 06:38 9.9K exn_22_m_cdna2genome..> 2016-08-25 06:38 14K exn_22_m_coding2codi..> 2016-08-25 06:38 18K exn_22_m_coding2codi..> 2016-08-25 06:38 2.8K exn_22_m_coding2geno..> 2016-08-25 06:38 18K exn_22_m_dna2protein..> 2016-08-25 06:38 776 exn_22_m_est2genome.exn 2016-08-25 06:38 9.6K exn_22_m_genome2geno..> 2016-08-25 06:38 10K …
Index of /~psgendb/birchhomedir/lib-linux-x86_64/trinityrnaseq-v2.14.0
Name Last modified Size Description Parent Directory – Analysis/ 2022-03-11 09:18 – Butterfly/ 2022-03-11 09:18 – Changelog.txt 2022-03-11 09:18 66K Chrysalis/ 2022-05-17 12:13 – Docker/ 2022-03-11 09:18 – Inchworm/ 2022-05-17 12:13 – LICENSE 2022-03-11 09:18 1.5K LICENSE.txt 2022-03-11 09:18 1.5K …
Index of /~psgendb/birchhomedir/BIRCHDEV/public_html/doc/BIRCH/doc/pkg/acedb/wspec
Name Last modified Size Description Parent Directory – GraphPackage 1994-01-20 15:59 1.0K cachesize.wrm 1995-05-10 02:54 1.5K constraints.wrm 1997-04-15 07:19 550 copyright 1999-12-10 08:44 880 database.wrm 2002-01-18 18:30 6.9K displays.wrm 2001-05-04 18:30 6.1K gtkrc 1999-07-01 12:06 98 layout.wrm 1997-07-03 18:32 241 …
Index of /~psgendb/birchhomedir/public_html/doc/local/pkg/PathVisio/modules/org.pathvisio.gex/build/org/pathvisio/gexplugin
Name Last modified Size Description Parent Directory – Activator.class 2012-03-08 16:50 1.0K ColumnTableModel$1.c..> 2012-03-08 16:50 1.0K ColumnTableModel$Hig..> 2012-03-08 16:50 2.4K ColumnTableModel.class 2012-03-08 16:50 1.7K GexImportWizard$1.class 2012-03-08 16:50 244 GexImportWizard$Colu..> 2012-03-08 16:50 1.4K GexImportWizard$Colu..> 2012-03-08 16:50 1.6K GexImportWizard$Colu..> 2012-03-08 16:50 1.4K …
Index of /~psgendb/birchhomedir/public_html/doc/pkg/spades/osx-x86_64/share/spades/spades_pipeline/scripts
Name Last modified Size Description Parent Directory – breaking_scaffolds_s..> 2019-12-26 08:20 1.8K check_test_script.py 2021-11-29 14:45 3.6K compress_all.py 2020-04-22 07:38 4.9K copy_files.py 2019-12-26 08:20 820 correction_iteration..> 2020-04-22 07:38 3.3K plasmid_glue.py 2022-01-31 17:00 1.1K postprocessing_scrip..> 2021-11-29 14:45 3.4K preprocess_contigs.py 2021-12-22 11:58 2.4K …
Index of /~psgendb/birchhomedir/local/pkg/ugene/data/cmdline
Name Last modified Size Description Parent Directory – align-clustalo.uwl 2019-09-24 01:05 3.0K align-clustalw.uwl 2019-09-24 01:05 5.1K align-kalign.uwl 2019-09-24 01:05 2.8K align-mafft.uwl 2019-09-24 01:05 2.7K align-tcoffee.uwl 2019-09-24 01:05 3.1K align-to-reference.uwl 2019-09-24 01:05 3.1K align.uwl 2019-09-24 01:05 2.7K convert-msa.uwl 2019-09-24 01:05 1.4K …
Index of /~psgendb/birchhomedir/GenBank/workspace/reads/454/reads.TrimmomaticSL8Q10m50
Name Last modified Size Description Parent Directory – 454.Trimmomatic.fq 2021-06-10 20:02 1.7G 454stats.tsv 2021-06-05 12:04 257 GQ8KZ7F02_S.fastq 2021-06-05 12:03 558M GQ8KZ7F02_S_fastqc.html 2021-06-05 12:06 280K GQ8KZ7F02_S_fastqc.zip 2021-06-05 12:06 315K GRAEVHH01_S.fastq 2021-06-05 12:03 576M GRAEVHH01_S_fastqc.html 2021-06-05 12:06 329K GRAEVHH01_S_fastqc.zip 2021-06-05 12:06 383K …
Index of /~psgendb/birchhomedir/public_html/doc/local/pkg/MeV_4_8_0/documentation/manual
Name Last modified Size Description Parent Directory – 2anova1.jpg 2011-09-09 05:55 121K 4.3.1.jpg 2011-09-09 05:55 117K 4.4.1.jpg 2011-09-09 05:55 63K 4.6.1.jpg 2011-09-09 05:55 38K 4.7.1.jpg 2011-09-09 05:55 56K 4.10.1.jpg 2011-09-09 05:55 63K 4.11.1.jpg 2011-09-09 05:55 112K 4.12.1.jpg 2011-09-09 05:55 55K …
Index of /~psgendb/birchhomedir/public_html/doc/local/pkg/RepeatMasker/Libraries/20110419/general
Name Last modified Size Description Parent Directory – at.lib 2011-06-16 10:05 660 at.lib.nhr 2011-06-16 10:05 170 at.lib.nin 2011-06-16 10:05 164 at.lib.nsq 2011-06-16 10:05 193 humspec.lib 2011-06-16 10:05 9.8K humspec.lib.nhr 2011-06-16 10:05 1.0K humspec.lib.nin 2011-06-16 10:05 304 humspec.lib.nsq 2011-06-16 10:05 2.4K …
Index of /~birch/birchhomedir/dat/GDE/GDEHELP-solaris-sparc/dat/mesquite/examples/Multivariate_Continuous
Name Last modified Size Description Parent Directory – 00-introduction.nex 2003-09-21 22:18 1.9K 01-wingsPlot.nex 2003-09-21 22:18 8.7K 02-wingsPCA.nex 2003-09-21 22:18 9.3K 03-wingsCVA.nex 2004-05-29 01:20 9.6K 04-anoles.nex 2003-09-21 22:19 8.4K 05-anoles.nex 2004-03-07 20:24 12K 06-anoles.nex 2003-09-21 22:19 13K 07-anoles.nex 2003-09-21 22:20 13K …
Index of /~birch/birchhomedir/dat/tGDE/GDEHELP-solaris-amd64/local/java/seahawk/com/hp/hpl/jena/util/iterator
Name Last modified Size Description Parent Directory – ClosableIterator.class 2009-08-28 15:16 191 ExtendedIterator.class 2009-08-28 15:16 674 Filter$1.class 2009-08-28 15:16 737 Filter$2.class 2009-08-28 15:16 946 Filter.class 2009-08-28 15:16 1.1K FilterIterator.class 2009-08-28 15:16 1.4K FilterKeepIterator.class 2009-08-28 15:16 741 Map1.class 2009-08-28 15:16 175 …
Index of /~birch/birchhomedir/dat/mGDE/GDEHELP-osx-x86_64/local/java/seahawk/com/hp/hpl/jena/rdf/arp/impl
Name Last modified Size Description Parent Directory – ANode.class 2009-08-28 15:16 162 ARPSaxErrorHandler.class 2009-08-28 15:16 1.1K ARPString.class 2009-08-28 15:16 1.8K AResourceInternal.class 2009-08-28 15:16 289 AbsXMLContext.class 2009-08-28 15:16 6.1K AttributeLexer.class 2009-08-28 15:16 5.4K CharacterModel.class 2009-08-28 15:16 1.7K DefaultErrorHandler.class 2009-08-28 15:16 1.3K …
Index of /~birch/birchhomedir/dat/GDE/GDEHELP-osx-x86_64/dat/mGDE/GDEHELP-linux-intel/local
Name Last modified Size Description Parent Directory – NewLocalFiles.list 2008-10-22 18:49 1.2K README 2002-10-25 19:44 631 admin/ 2009-09-18 10:46 – bin-linux-intel/ 2002-10-25 19:46 – bin-linux-x86_64/ 2007-06-04 17:52 – bin-osx-x86_64/ 2008-10-17 14:09 – bin-solaris-amd64/ 2005-12-06 13:12 – bin-solaris-sparc/ 2002-10-25 19:44 – …
Index of /~psgendb/birchhomedir/public_html/doc/pkg/acedb/whelp/AQL/Tutorial
Name Last modified Size Description Parent Directory – index.shtml 2011-05-17 19:57 14K queries.txt 2011-05-17 19:57 1.4K result.shtml 2011-05-17 19:57 354 result1.shtml 2011-05-17 19:57 643 result2.shtml 2011-05-17 19:57 787 result3.shtml 2011-05-17 19:57 937 result4.shtml 2011-05-17 19:57 1.1K result5.shtml 2011-05-17 19:57 613 …
Index of /~birch/birchhomedir/java/Mesquite_Folder/mesquite/trees/BasicTreeWindowMaker/recent
Name Last modified Size Description Parent Directory – recent0.gif 2003-09-04 01:59 915 recent1.gif 2003-09-04 01:58 922 recent2.gif 2003-09-04 01:59 925 recent3.gif 2003-09-04 01:59 932 recent4.gif 2003-09-04 02:00 936 recent5.gif 2003-09-04 01:57 935 recent6.gif 2003-09-04 01:57 940 recent7.gif 2003-09-04 01:57 940 …
Index of /~psgendb/birchhomedir/public_html/doc/local/biopython-1.55.old/Tests/SwissProt
Name Last modified Size Description Parent Directory – keywlist.txt 2010-10-07 10:28 3.2K keywlist2.txt 2010-10-07 10:28 1.3K sp001 2010-10-07 10:28 3.2K sp002 2010-10-07 10:28 2.7K sp003 2010-10-07 10:28 6.9K sp004 2010-10-07 10:28 4.7K sp005 2010-10-07 10:28 2.3K sp006 2010-10-07 10:28 2.4K …
Index of /~birch/birchhomedir/dat/dGDE/GDEHELP-osx-x86_64/doc/mesquite/doc/popGen/images
Name Last modified Size Description Parent Directory – assoc.gif 2003-08-26 14:07 18K assoc2.gif 2003-08-26 14:07 6.2K assocEst.gif 2003-08-26 14:07 18K assocList.gif 2003-08-26 14:07 11K createNewPop.gif 2003-08-26 14:08 24K depths.gif 2003-08-26 14:08 6.2K depths10000.gif 2003-08-26 14:08 7.2K geneTree.gif 2003-08-26 14:08 3.2K …
Index of /~psgendb/birchhomedir/public_html/doc/pkg/samtools-1.7/htslib-1.7/htslib
Name Last modified Size Description Parent Directory – bgzf.h 2018-01-10 07:45 14K cram.h 2015-09-25 05:36 15K faidx.h 2017-02-07 11:06 5.6K hfile.h 2018-01-26 05:33 9.6K hts.h 2017-11-24 09:46 29K hts_defs.h 2017-08-10 11:07 3.3K hts_endian.h 2017-09-27 10:40 11K hts_log.h 2017-06-03 15:45 3.8K …
Index of /~psgendb/birchhomedir/public_html/doc/spades/pyyaml3
Name Last modified Size Description Parent Directory – __init__.py 2016-12-30 10:41 9.4K composer.py 2016-12-30 10:41 4.8K constructor.py 2016-12-30 10:41 25K cyaml.py 2016-12-30 10:41 3.2K dumper.py 2016-12-30 10:41 2.7K emitter.py 2016-12-30 10:41 42K error.py 2016-12-30 10:41 2.5K events.py 2016-12-30 10:41 2.4K …
Index of /~psgendb/birchhomedir/public_html/doc/pkg/samtools-1.7/misc
Name Last modified Size Description Parent Directory – HmmGlocal.java 2014-08-01 09:48 9.0K ace2sam.c 2016-05-10 08:11 11K blast2sam.pl 2017-09-14 10:20 5.2K bowtie2sam.pl 2014-08-18 14:29 3.3K export2sam.pl 2014-08-01 09:48 18K interpolate_sam.pl 2014-08-18 14:29 6.0K maq2sam.c 2017-12-12 11:10 7.2K md5fa.c 2017-07-24 09:15 2.8K …
Index of /~psgendb/birchhomedir/public_html/doc/local/pkg/PathVisio
Name Last modified Size Description Parent Directory – CHANGELOG.txt 2007-09-14 15:09 760 CONTRIBUTORS.txt 2012-02-23 23:59 276 LICENSE-2.0.txt 2006-12-01 12:58 11K MAPPTmpl.gtp 2006-10-13 19:57 180K NOTICE.txt 2011-10-04 08:53 1.4K PathVisio.ipr 2009-10-28 14:17 38K XMLSchema.xsd 2006-08-23 07:33 86K apidoc/ 2012-03-08 16:50 – …
Index of /~psgendb/birchhomedir/admin/launchers/biolegato.app/Contents/Resources/local/java/TIGR/MeV_4_6_1/R-2.9.1/library/spatial/html
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Index of /~psgendb/birchhomedir/BIRCHDEV/public_html/doc/pkg/acedb4.9.27/winfo/Newsletters/Year2002
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Index of /~psgendb/birchhomedir/BIRCHDEV/tutorials/bioLegato/genome_assembly/Assembly
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Index of /~psgendb/birchhomedir/lib-linux-x86_64/python/lib64/python3.5/site-packages/numpy
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Index of /~psgendb/birchhomedir/dat/blpalign/seqcolors
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Index of /~psgendb/birchhomedir/doc/local/pkg/PathVisio2.0.11/modules
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