Tag: bulkRNAseq
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
Bulk RNA seq with deseq2, rnaseqGene, or edgeR 0 @fdd03415 Last seen 1 day ago United States Hi, This might be a very simple question but I am new to bulkRNAseq and would like to analyze paired FastQ files with DESeq2, rnaseqGene, or edgeR. Could anyone provide me with some…
mapping – STAR error in snakemake pipeline: “EXITING because of FATAL ERROR: could not open genome file”
I’m trying to use a 2 pass STAR mapping strategy (also explained here informatics.fas.harvard.edu/rsem-example-on-odyssey.html), but I’m getting an error. I’ve read through this page [https://github.com/alexdobin/STAR/issues/181] and I have a similar issue, but the discussed solutions don’t seem to help. Perhaps this is more a snakemake issue rather than a STAR…
DEGs with uninsteresed sample files
DEGs with uninsteresed sample files 1 Hi all, I am working on some bulkRNAseq data from GEO and my sample description looks like this. I am interested in A vs B, A vs C and B vs C but I am not interested in sample D. My question is whether…
