Tag: c++

X-ray Imaging of Marine / Plankton Samples

EMBL is Europe’s research laboratory for the life sciences – an intergovernmental organisation with more than 110 independent research groups and service teams carrying out research across the life sciences. We operate across six sites in Heidelberg (headquarters), Barcelona, Grenoble, Hamburg, Hinxton (near Cambridge) and Rome. Our mission is to perform…

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Research Fellow in Cancer Bioinformatics at Royal College of Surgeons in Ireland

Reporting to: Dr Simon Furney Location: York House, Dublin 2 Contract/Duration: Specified purpose contract for 3 years Start Date: Autumn 2023 Summary of Post This is an exciting opportunity to join the Genomic Oncology Research Group led by Dr. Simon Furney. I am seeking an experienced, ambitious, and motivated Research Fellow in Cancer Bioinformatics…

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How to find the c++/cuda implementation of specific operators in pytorch source code

Recently, I’ve been working on resolving some numerical precision alignment issues. Take the division operator as an example; the computation yields different results on CPU and CUDA or when expressed using different syntax, as seen in the attached screenshot. I’m endeavoring to uncover the underlying reasons through various methods, and…

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SeLU Activation Function Implementation In GRUCell – C++

The actual task is to replace the tanh_() at line#799 with SeLU activation function in new_gate of gru_cell. The following code block is the RNN.cpp file from PyTorch’s Official Repo. template <typename cell_params> struct GRUCell : Cell<Tensor, cell_params> { using hidden_type = Tensor; hidden_type operator()( const Tensor& input, const hidden_type&…

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SeLU Activation Function Implementation In GRUCell PyTorch C++

PyTorch does not provide an in-place version of the SeLU activation function, i.e., selu_(). The in-place function tanh_() modifies the tensor it’s called on, whereas selu() returns a new tensor and leaves the original unchanged. If you want to apply the SeLU activation function to new_gate, you can simply replace…

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Libtorch make linker error on M2 Mac – C++

sjoptra (S) October 8, 2023, 5:12am 1 Following the exact steps in Installing C++ Distributions of PyTorch — PyTorch main documentation, I created the following file structure as indicatedexample-app/CMakeLists.txtexample-app.cpp when I runmkdir buildcd buildcmake -DCMAKE_PREFIX_PATH=/absolute/path/to/libtorch …cmake –build . –config Release I get the following linker error [ 50%] Building CXX…

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sparkle-server/.openapi-generator-ignore at main – sparkle-server

# OpenAPI Generator Ignore # Generated by openapi-generator github.com/openapitools/openapi-generator # Use this file to prevent files from being overwritten by the generator. # The patterns follow closely to .gitignore or .dockerignore. # As an example, the C# client generator defines ApiClient.cs. # You can make changes and tell OpenAPI Generator…

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C++ HPC/AI Performance Engineer for Cutting-Edge Finance Innovation

Optimize high-performance and AI compute workloads for a cutting-edge Proprietary Trading Firm. If you’re a seasoned software performance engineering with a passion for innovation and a knack for solving complex challenges, this is the opportunity for you.   Our client is seeking a High-Performance Compute (HPC)/AI Performance Engineer to play…

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Senior Bioinformatics Scientist (Hybrid) Job Description

Job Description We are seeking a highly motivated bioinformatics scientist to join our global research team. The scientist will evaluate, develop, and optimize computational methods to analyze next-generation sequencing datasets in support of our drug discovery and development programs, and will produce bioinformatics pipelines that can be operated on high-performance computing…

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GenScript hiring Senior Research Scientist, Bioinformatics (Greater Seattle, WA) in United States

About GenScriptGenScript Biotech Corporation (Stock Code: 1548.HK) is a global biotechnology group. Founded in 2002, GenScript has an established global presence across North America, Europe, the Greater China, and Asia Pacific. GenScript’s businesses encompass four major categories based on its leading gene synthesis technology, including operation as a Life Science…

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Job Application for Software Engineer – open source

Who we are Quansight has its roots in the Python data science community. Our founders have had significant involvement in creating and maintaining NumPy, SciPy, Jupyter, Spyder, Dask, Conda, Numba, and other projects, as well as PyData NumFOCUS, and Anaconda. Our mission is to connect companies to open-source communities to…

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c++ – LAMMPS build error C1090: PDB API call failed, error code ‘5’

I’m trying to build my LAMMPS library after adding to a simple int return test function to see if I could access the library’s files through C# & Unity. I’m using cmake to compile, with the following command: cmake ../cmake -DBUILD_SHARED_LIBS=yes -DBUILD_MPI=no I then try to build with this command:…

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PyTorch 2.1: automatic dynamic shape compilation, distributed checkpointing

by Team PyTorch We are excited to announce the release of PyTorch® 2.1 (release note)! PyTorch 2.1 offers automatic dynamic shape support in torch.compile, torch.distributed.checkpoint for saving/loading distributed training jobs on multiple ranks in parallel, and torch.compile support for the NumPy API. In addition, this release offers numerous performance improvements…

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High performance Llama 2 deployments with AWS Inferentia2 using TorchServe

by Mike Zhang, Li Ning, Sergey Ivanov, Naman Nandan, Hamid Shojanazeri, Geeta Chauhan, Abhi Shivaditya, Michael Nguyen, Pinak Panigrahi Recently, Llama 2 was released and has attracted a lot of interest from the machine learning community. Amazon EC2 Inf2 instances, powered by AWS Inferentia2, now support training and inference of Llama 2 models….

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Changing the LAMMPS source code for applying electric field – LAMMPS Development

Hello, I have a question and I would be thankful if you could help me. I am trying to change a small part of the Lammps source code to add an Electric Field parameters (ex, ey, ez) to the reaxff_nonbonded.cpp and fix_qeq_reaxff files. These changes solve the problem of unphysical…

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How to Build an Interactive Chat-Generation Model using DialoGPT and PyTorch

by Intel The focus on interactive chat-generation (or conversational response-generation) models has greatly increased in the past several months. Conversational response-generation models such as ChatGPT and Google Bard have taken the AI world by storm. The purpose of interactive chat generation is to answer various questions posed by humans, and…

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Reinstalling GROMACS with CUDA GPU – User discussions

GROMACS version: 2023.2GROMACS modification: Yes/NoHere post your question $ nvcc –versionnvcc: NVIDIA (R) Cuda compiler driverCopyright (c) 2005-2021 NVIDIA CorporationBuilt on Thu_Nov_18_09:45:30_PST_2021Cuda compilation tools, release 11.5, V11.5.119Build cuda_11.5.r11.5/compiler.30672275_0 $ nvidia-smiTue Oct 3 13:42:40 2023±————————————————————————————–+| NVIDIA-SMI 535.103 Driver Version: 537.13 CUDA Version: 12.2 ||—————————————–±———————±———————+| GPU Name Persistence-M | Bus-Id Disp.A |…

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Deep Learning in OpenCV – opencv

Deep Learning is the most popular and the fastest growing area in Computer Vision nowadays. Since OpenCV 3.1 there is DNN module in the library that implements forward pass (inferencing) with deep networks, pre-trained using some popular deep learning frameworks, such as Caffe. In OpenCV 3.3 the module has been…

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CEDARS-SINAI Research Bioinformatician III – Applied Genomics, Computation & Translational Core in Los Angeles, CA | 873625048

The Applied Genomics, Computation & Translational Core is looking for a Bioinformatician to join the team! The Cedars-Sinai Applied Genomics, Computation, and Translational Core (AGCT Core) is a fully equipped, innovative genomics facility offering data generation and interpretation for basic science and translational research in next-generation sequencing technologies, including single…

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Exception with opacus library – Captum

sam435 (Sam) October 1, 2023, 6:28pm 1 I am using integrated gradients for feature attributions on a model trained using DP-SGD with opacus library. However, calling attribute() throws the exception below. Calling the same on a non-private model works without any issues. Any hints on why captum throws this error…

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An Introduction to PyTorch for Deep Learning | by Gaurav Garg | Sep, 2023

PyTorch is an open source machine learning library for Python that provides a flexible platform for building and training neural networks. Originally developed by Facebook’s AI research group, PyTorch has quickly become one of the most popular deep learning frameworks due to its speed, ease of use, and consistency with…

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Debugging PyTorch CUDA Extensions – C++

Jerome_Ku (Jerome Ku) October 1, 2023, 12:21am 1 Are there tools / best practices for mixed python / cpp / cuda debugging for torch CUDA Extensions (extensions built with CUDAExtension)? I.e., I’d like to run / debug a PyTorch program from Python and then step into a debugger such as…

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Principal Software Engineer (Team Lead) @ RStudio

We seek a software engineer with Go experience and leadership skills to join our Platform team. The team works across all Posit products, developing shared components and enabling customers to use the products better. This is a high-leverage team that can impact many people and customers. You’ll be working on…

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Senior Bioinformatics Scientist – Jobs South Africa

Location Not specified, Full Time Deadline: Not specified Position summaryAs a Senior Bioinformatics Scientist, you will provide bioinformatics support for product research and development, as well as the marketing, sales and on-market product support teams. You will collaborate and innovate with bioinformatics scientists, software engineers and  molecular biologists to build…

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Postdoctoral Fellow – Pathogen Informatics and Modelling Group – EMBL-EBI

Postdoctoral Fellow – Pathogen Informatics and Modelling Group EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom The Pathogen Informatics and Modelling group at EMBL-EBI aims to develop innovative approaches to help apply the power of sequencing to controlling pathogen threats. We are interested both in producing methods, and generating biological…

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BLAST WASM

BLAST is a family of tools used to compare biological sequences, such as protein or DNA sequences, against a database of sequences. It is used in bioinformatics applications, including genome annotation, gene discovery, and phylogenetic analysis of DNA and protein sequences. The BLAST source code is written in C++ and…

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BigQuery ML vs Vertex AI

There is a widespread trend and belief in the technology industry that “The Future is Cloud”. It is estimated that all the physical computations will be carried out by cloud in the future through cloud computing. Cloud Platforms from Google, Amazon, and Microsoft have shown a solid and significant growth…

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Gen AI Architect – ePeople Technologies Inc

Job Title: Gen AI Architect Duration – Long Term Contract Location – San Francisco CA- Remote- Preferred from West Coast Skills: Deep and hands-on expertise in (as an individual contributor) Undertaking data collection, Data mining, preprocessing and analysis of structured and unstructured data. Hands-on expertise in large language models (LLMs/LSTMs/BERT) that…

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c# – How can I make LAMMPS into a Unity native-plugin?

Context: I have been tasked with creating an interactive molecular dynamics simulation in Unity. The library I have been instructed to use is LAMMPS, which is based in C++. I have been looking at solutions for using C++ libraries within Unity by creating dlls to interact with C#, but it…

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132releng-armv7-quarterly][misc/pytorch] Failed for pytorch-1.13.1_1 in configure

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere1/data/132releng-armv7-quarterly/2be22e0743b5/logs/pytorch-1.13.1_1.log Build URL: pkg-status.freebsd.org/ampere1/build.html?mastername=132releng-armv7-quarterly&build=2be22e0743b5 Log: =>> Building misc/pytorch build started at Mon Sep 25…

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5 Best Libraries in C/C++ For ML in 2023

Being a compiled language, C++, the go-to framework for developers, can translate into machine code before execution, making it ideal for computationally intensive jobs like training large neural networks. Its robust memory management provides optimisation opportunities for machine learning algorithms. Moreover, it seamlessly integrates with other tools such as CUDA…

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main-arm64-default][biology/viennarna] Failed for viennarna-2.6.3 in build

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere2/data/main-arm64-default/p85ccf094713a_sc584bb9cac1/logs/viennarna-2.6.3.log Build URL: pkg-status.freebsd.org/ampere2/build.html?mastername=main-arm64-default&build=p85ccf094713a_sc584bb9cac1 Log: =>> Building biology/viennarna build started at Sat Sep 23…

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CEDARS-SINAI Research Bioinformatician III – Applied Genomics, Computation & Translational Core in Los Angeles, CA | 870742028

The Applied Genomics, Computation & Translational Core is looking for a Bioinformatician to join the team! The Cedars-Sinai Applied Genomics, Computation, and Translational Core (AGCT Core) is a fully equipped, innovative genomics facility offering data generation and interpretation for basic science and translational research in next-generation sequencing technologies, including single…

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Ninja: build stopped: subcommand failed. note: see declaration of ‘PyDict_GetItem’

Hello community! This is my first post so I apologize if I am doing something wrong. I am running into an issue when trying to build pytorch-1.12.1 from source. I have search the web for a solution but cannot find one. I am not familiar with C++ so this stuff…

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10 Robotics Intern Jobs to Apply

Here is a list of 10 robotics intern jobs that you can apply for in 2023 Robotics is a fascinating and rapidly evolving field that combines engineering, computer science, and artificial intelligence to create machines that can perform tasks that are difficult, dangerous, or impossible for humans. Robotics is also…

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University of Washington hiring Bioinformatics Specialist, Software Engineer in Seattle, Washington, United States

Req #: 227105 Department: GENOME SCIENCES Posting Date: 09/20/2023 Closing Info: Open Until Filled Salary: $6,843 to $7,917 per month Shift: First Shift Notes: As a UW employee, you will enjoy generous benefits and work/life programs. For a complete description of our benefits for this position, please visit our website,…

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10 reasons why PyTorch is the deep learning framework of the future

It doesn’t matter whether you’re a student, a researcher, a data scientist, a machine learning engineer, or just a machine learning enthusiast, you’re surely going to find PyTorch very useful. As you might be aware, PyTorch is an open source machine learning library used primarily for applications such as computer…

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Bioinformatics Scientist – Noralogic Inc

Job Title: Bioinformatics Scientist Job Location: Bethesda , MD (20892) Job Type: Contract (Onsite) General Summary Additional Qualifications – Master’s degree in Bioinformatics or a related discipline – Two years’ experience Field of Study Biochemical Sciences Information Sciences Software MS Office R PowerPoint Unix Image J Outlook Python JAVA C++…

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Gromacs +cp2k installation – User discussions

GROMACS version: 2023.1 Hello. I am trying to compile gromacs-2023.1 with cp2k-2023.2, but I am not being able to link the fftwf3 library. So when I run the following command: cmake … -DBUILD_SHARED_LIBS=OFF -DGMXAPI=OFF -DGMX_INSTALL_NBLIB_API=OFF -DGMX_DOUBLE=ON -DGMX_FFT_LIBRARY=fftw3 -DFFTWF_LIBRARY=/home/edivaldo/cp2k/tools/toolchain/install/fftw-3.3.10/lib -DFFTWF_INCLUDE_DIR=/home/edivaldo/cp2k/tools/toolchain/install/fftw-3.3.10/include -DGMX_BLAS_USER=/home/edivaldo/cp2k/tools/toolchain/install/openblas-0.3.23/lib/libopenblas.a -DGMX_LAPACK_USER=/home/edivaldo/cp2k/tools/toolchain/install/scalapack-2.2.1/lib/libscalapack.a -DGMX_CP2K=ON -DCP2K_DIR=“/home/edivaldo/cp2k/lib/local/psmp” -DGMX_MPI=on I keep getting this warning:– The…

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Node.js 2023 Edition Available

The Node.js team has recently released version 20.6.0, which brings improvements in environment variable configuration, module resolution, module customization, and experimental support for C++ garbage collection. In this patch, developers gain a new feature: built-in support for `.env` files. These files, following the INI file format, offer a simplified approach…

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Carnegie Mellon University hiring Bioinformatics Support Specialist – Mellon College of Science – Pittsburgh Supercomputing Center in Pittsburgh, PA

The Pittsburgh Supercomputing Center (PSC), a joint research center of Carnegie Mellon University and the University of Pittsburgh, was established in 1986, and for over 30 years has provided university, government and industrial researchers with access to several of the most powerful systems for sophisticated computational research, communications and data…

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Research Software Engineer job with Human Technopole

APPLICATION CLOSING DATE: October 30th, 2023   About the Institute: Human Technopole (HT) is a new interdisciplinary life science research institute, created and supported by the Italian government, with the aim of developing innovative strategies to improve human health. HT has the mission of conducting cutting-edge research and translating innovation into…

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C++ simple neural network code loss not changing – C++

Hi, I am trying to use the C++ frontend to train two neural network together with one optimizer. But my loss function value is not changing throughout the training process. Can someone please help me by taking a look at the following code? I suspect the problem is the way…

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r – error when installing rgdal package on ubuntu 22.04, rstudio-sever 2023.06.02

I have recently upgraded my Ubuntu version from 20.04 to 22.04 LTS and Rstudio-server to 2023.06.02. The R version is 4.3.1. After that the shiny App I am developing, which ran OK on the previous version, was giving an error of the type ‘libproj.so.15 – cannot open shared file’. After…

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Error executing process > consensus_classification in NanoCLUST

Error executing process > consensus_classification in NanoCLUST 1 Hello, I’m trying to run NanoCLUST with my 16S sequence data. I run it on a Linux ubuntu 20.04 machine. When I use the command: nextflow run main.nf -profile docker –reads “*.fastq” –db “db/16S_ribosomal_RNA” –tax “db/taxdb/” I get the following terminal output:…

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[hip-runtime-amd] python-pytorch{,-opt}-rocm segfault on inference for gfx1100

Description: Pytorch-rocm segfaults in libamdhip64.so after a recent update. It no longer works for at least Radeon w7900 or rx7900xtx (gfx1100). Additional info: * package version(s) * config and/or log files etc. * link to upstream bug report, if any Steps to reproduce: Install python-pytorch-rocm or python-pytorch-opt-rocm version 2.0.1-9, and…

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PyTorch faster than Libtorch for CNN inference – C++

mamsds (mamsds) September 17, 2023, 3:16am 1 I narrow down the comparison to the below code snippets (v16mms is a List/Vector of models): spdlog::info(“Running inference”); for (size_t i = 0; i < v16mms.size(); ++i) { outputs[i] = v16mms[i].forward(input).toTensor(); output += outputs[i]; } spdlog::info(“Done”); VS logging.info(‘Running inference’) for i in range(len(v16mms)):…

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Data Scientist (ML) – PyTorch, Pandas, Python

At Terminal, we connect two communities divided by geography, but destined to transform tech: remote, career-minded, tech talent like YOU and fast-growing companies with global ambition. Terminal wants talented engineers to earn more, learn more and succeed as tech professionals while working from home. Named a “Best Place to Work”…

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boost/regex/v4/regex_token_iterator.hpp – 1.76.0

boost/regex/v4/regex_token_iterator.hpp /* * * Copyright (c) 2003 * John Maddock * * Use, modification and distribution are subject to the * Boost Software License, Version 1.0. (See accompanying file * LICENSE_1_0.txt or copy at www.boost.org/LICENSE_1_0.txt) * */ /* * LOCATION: see www.boost.org for most recent version. * FILE regex_token_iterator.hpp *…

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11 Essential AI and ML Python Libraries

Machine Learning (ML), a subfield of Artificial Intelligence (AI), enables computers to carry out tasks without specific instruction, by learning from experience. Python has excellent support for ML with its extensive feature set and wide range of third-party libraries. MUO VIDEO OF THE DAY SCROLL TO CONTINUE WITH CONTENT The…

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Pytorch : Unable to Train YoloV5 on Jetson Orin AGX GPU (using CUDA) – Jetson AGX Orin

Device : Jetson Orin AGXJetpack Version : 5.1CUDA Version : 11.4 So it went well when I trained my Obj detection with Yolo by using my CPU (with torch 2.0.1 from pytorch website). However when I tried to train my Obj detection by using my GPU, it failed after just…

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GROMACS SYCL for Intel GPU – User discussions

GROMACS version: 2023.2GROMACS modification: Yes/NoHi,I’ve just install GROMACS with SYCL enabled, however, it seems like GROMACS cannot detect my GPU. My GPU is Intel Iris Xe Graphics, I’m using Ubuntu 22.04, CMake 3.27.4, and Intel oneAPI DPC++/C++ Compiler with MKL library 2023.2 for SYCL. Here it says SYCL is enabled:…

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8 Ways Python Makes AI and ML Easier and Better

The 8 Advantages of Python in AI and ML Artificial Intelligence (AI) and Machine Learning (ML) have revolutionized how we approach complex problems and data analysis. Python, a versatile and powerful programming language, has played a pivotal role in this transformation. Python’s popularity in the AI and ML community is…

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What are the “correct” CMake settings to compile the PyTorch? – C++

pholonow (Piotr Hołonowicz) September 15, 2023, 1:32pm 1 Hi Everyone!I would like to compile a custom version of the PyTorch. Could someone kindly tell me, what are the “safe” CMake settings that guarantee a successful compilation? In particular, we would like to use CUDA 12.1.Thanks!Piotr ptrblck September 15, 2023, 2:40pm…

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Staff Bioinformatics Scientist – Machine Learning/Classifier Research and Development #2802 (Bay Area) at GRAIL – Menlo Park, CA

GRAIL is a healthcare company whose mission is to detect cancer early, when it can be cured. GRAIL is focused on alleviating the global burden of cancer by developing pioneering technology to detect and identify multiple deadly cancer types early. The company is using the power of next-generation sequencing, population-scale…

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c# – How to authenticate Bitstamp HTTP API v2 request using OpenAPI specification – Stack Overflow

I am using OpenAPI specification that I got from www.bitstamp.net/api/ I used a tool called NSWAG to generate the client for me. I can’t seem to authenticate with it, keep getting the following error. I have looked at so many examples but I can’t seem to to get it to…

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Clustering-predicted structures at the scale of the known protein universe

Structural clustering algorithm The clustering procedure is similar to MMseqs2’s clustering but, instead of using sequences, Foldseek’s 3Di alphabet (Extended Data Fig. 1) was used to represent the structures as one-dimensional sequences. The clustering algorithm combines Linclust17 and cascaded MMseqs2 (ref. 42) clustering. The pipeline applies this strategy to allow for efficient…

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hypothetical protein LOTGIDRAFT_112989, maker-scaffold299_size217019-snap-gene-1.29 (gene) Tigriopus kingsejongensis

Associated RNAi Experiments Homology BLAST of hypothetical protein LOTGIDRAFT_112989 vs. L. salmonis genes Match: EMLSAG00000011196 (supercontig:LSalAtl2s:LSalAtl2s761:366436:368626:1 gene:EMLSAG00000011196 transcript:EMLSAT00000011196 description:”maker-LSalAtl2s761-augustus-gene-2.9″) HSP 1 Score: 208.764 bits (530), Expect = 1.424e-65Identity = 100/171 (58.48%), Postives = 126/171 (73.68%), Query Frame = 0 Query: 120 NPIVFFDITIGGDPVGRIVMELYANVVPKTVDNFRALCTGEKGQVGGSGIPLHYKNSSFHRVINRFMLQGGDFTAGDGTGGASIYGEKFADENFLLKHEKPGLLSMANAGPGTNGSQFFLTTVNCPHLDGKHVVFGRAIKGMGIVNEIEVMETT-SDKPNVEVKIADCGQI 289 NP+VFFDI +G +GRIVMEL+A+V PKT +NFR CTGE…

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University of Kentucky hiring Bioinformatics Analyst in Lexington, Kentucky, United States

Posting DetailsJob Title Bioinformatics AnalystRequisition Number RE41798Working TitleDepartment Name 7H030:SANDERS-BROWN CTR ON AGINGWork Location Lexington, KYGrade Level 46Salary Range $51,491-84,950/yearType of Position StaffPosition Time Status Full-TimeRequired EducationMSClick here for more information about equivalencies: hr.uky.edu/employment/working-uk/equivalenciesRequired Related ExperienceNo experience required.Required License/Registration/CertificationNonePhysical RequirementsMay require long periods of sitting and/or standing and using a…

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Bioinformatics Engineer job with GeneGenieDx Corp

Introduction of GeneGenieDx : GeneGenieDx is a biotech company founded in 2020 in the Bay Area, California. Our mission is to discover novel biomarkers and translate them into better clinical diagnostic products. Our current focus is to develop cutting-edge bioinformatics and machine-learning algorithms to enable the discovery of immune-related diagnostic…

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University of Kentucky hiring Bioinformatics Analyst in United States

Posting DetailsJob Title Bioinformatics AnalystRequisition Number RE41803Working TitleDepartment Name 7P180:DEPT OF BIOSTATISTICSWork Location Hybrid/RemoteGrade Level 46Salary Range $51,491-84,950/yearType of Position StaffPosition Time Status Full-TimeRequired EducationMSClick here for more information about equivalencies: hr.uky.edu/employment/working-uk/equivalenciesRequired Related ExperienceNo experience required.Required License/Registration/CertificationNonePhysical RequirementsMay require long periods of sitting and/or standingShiftPrimarily Days Monday – Friday Between…

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GeneGenieDx Corp hiring Bioinformatics Engineer in Pleasanton, CA

Introduction of GeneGenieDx: GeneGenieDx is a biotech company founded in 2020 in the Bay Area, California. Our mission is to discover novel biomarkers and translate them into better clinical diagnostic products. Our current focus is to develop cutting-edge bioinformatics and machine-learning algorithms to enable the discovery of immune-related diagnostic biomarkers…

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Russell apprentices: Investing in future (re)insurance skills and talent

Russell Group’s Suki Basi explains why investing in talent is critical in order to manage the connected risk threat. The connected risk threat is complex, and requires storytelling abilities through insights and solutions that are recognised by clients, partners and the media. Furthermore, in a competitive recruitment market, the idea…

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gromacs: Source code changes report for 2022.4 vs. 2022.5

gromacs: Source code changes report for 2022.4 vs. 2022.5 | Fossies Diffs   “Fossies” – the Fresh Open Source Software Archive   Source code changes report for “gromacs” between the packagesgromacs-2022.4.tar.gz and gromacs-2022.5.tar.gz About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of…

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Roche hiring Principal Scientist I Bioinformatics in Mississauga, Ontario, Canada

The PositionRoche Sequencing Solutions (RSS), a business within Roche Diagnostics, focused on developing a disruptive Next-Generation Sequencing (NGS) platform along with a portfolio of reagents, assays and informatics solutions for multiple disease areas. We are looking for a Principal Bioinformatics Scientist in the NGS Algorithms and Applications team to support…

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New open source NVIDIA toolkit aims to boost inference speed

NVIDIA is open-sourcing a new suite of software including a Python API to make it easier for developers to train and run AI on its GPUs. The set of tools are designed to make it faster and more efficient to run large language models without having to coordinate complex execution…

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Difference between model training in PyTorch and libTorch (c++) (solved)

I was trying to train a model in C++ API (libtorch) and got bad results. I then compared in a detailed way to pytorch. My network is very simple (linear with 4 inputs and outputs and only one hidden layer). In order to compare I set all in sequential in…

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Postdoc Research Associate in Bioinformatics/Computational Biology

The laboratory of Chongzhi Zang at the Center for Public Health Genomics, University of Virginia (UVA) is seeking to fill multiple Postdoctoral Research Associate positions in the broad field of bioinformatics and computational biology. The research program in the lab focuses on developing computational methodologies and designing integrative data science…

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Data Engineering / Machine Learning Engineer – TensorFlow, PyTorch, scikit-learn, Data Preprocessing – Zscaler

Company Description Zscaler (NASDAQ: ZS) accelerates digital transformation so that customers can be more agile, efficient, resilient, and secure. The Zscaler Zero Trust Exchange is the company’s cloud-native platform that protects thousands of customers from cyberattacks and data loss by securely connecting users, devices, and applications in any location. With…

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How to Optimize Your DL Data-Input Pipeline with a Custom PyTorch Operator | by Chaim Rand

PyTorch Model Performance Analysis and Optimization — Part 5 Photo by Alexander Grey connected Unsplash This station is nan 5th successful a bid of posts connected nan taxable of capacity study and optimization of GPU-based PyTorch workloads and a nonstop sequel to portion four. In portion four, we demonstrated really…

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Bioinformaticist (Scott) – (Job Number: 3258449) at Mass General Brigham in Mei Mass Eye And Ear Main Building Boston, Boston 1070276

!*! A talented bioinformaticist with experience in genomics is sought to join the Massachusetts Eye and Ear Bioinformatics Center (MBC) of the Ocular Genomics Institute (OGI) at Mass Eye and Ear (MEE) and Harvard Medical School. The mission of the OGI is to improve our understanding of the genetic causes…

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New Language Mojo Seeks End to AI Framework Sprawl

A software development kit for Mojo, a new Python-based language for AI development created by former Google engineers, is now available for download on Linux systems, with support for Mac and Windows coming soon, the company behind Mojo announced today. Mojo is Pythonic language designed to help AI developers get…

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Building Pytorch – Missing Symbols – deployment

Cyberes September 7, 2023, 6:09am 1 I’m working on compiling PyTorch in my Dockerfile and running into a strange issue where the compiled libtorch.so only contains 4 symbols: ~ $ nm -D /opt/conda/lib/python3.9/site-packages/torch/lib/libtorch.so w _ITM_deregisterTMCloneTable w _ITM_registerTMCloneTable w __cxa_finalize w __gmon_start__ Compare that to the libtorch.so from pip: U __cxa_allocate_exception…

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pytorch-2.1.0-rc3.tar.gz: …/csrc/onnx/init.h | Fossies

pytorch-2.1.0-rc3.tar.gz: …/csrc/onnx/init.h | Fossies “Fossies” – the Fresh Open Source Software Archive Member “pytorch-2.1.0-rc3/torch/csrc/onnx/init.h” (6 Sep 2023, 153 Bytes) of package /linux/misc/pytorch-2.1.0-rc3.tar.gz: As a special service “Fossies” has tried to format the requested source page into HTML format using (guessed) C and C++ source code syntax highlighting (style: standard) with…

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How-to use C# openapi-generator without SSL

I’m using openapi-generator to create a C# class for accessing a REST API. This REST API is http and does not have a SSL certificate. The generated C# class was done by this command java -jar ./openapi-generator-cli.jar generate -g csharp -i ../../openapi.yaml -o cn_http_client_csharp –additional-properties=artifactId=http-client –additional-properties=io.swagger.parser.util.RemoteUrl.trustAll=true –additional-properties=io.swagger.v3.parser.util.RemoteUrl.trustAll=true –skip-validate-spec When testing…

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Bioinformatics Research Scientist job in San Mateo, CA at Conflux Systems @ Get.It

Position: Bioinformatics Scientist for Virology Cure Programs We are looking for a talented and driven individual to join our team as a Bioinformatics Scientist for our Virology Cure Programs. Under this role, you will be responsible for collaborating with other research functions to create data analysis tools that investigate viral…

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Imaging and Bioinformatics Machine Learning Scientist at Altos Labs

Our Mission To restore cell health and resilience through cellular rejuvenation programming to reverse disease, injury, and the disabilities that can occur throughout life. For more information, see our website at altoslabs.com. Diversity at Altos We believe that diverse perspectives are foundational to scientific innovation and inquiry.  We are building…

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Altos Labs hiring Imaging and Bioinformatics Machine Learning Scientist in San Francisco, California, United States

Our MissionTo restore cell health and resilience through cellular rejuvenation programming to reverse disease, injury, and the disabilities that can occur throughout life. For more information, see our website at altoslabs.com. Diversity at Altos We believe that diverse perspectives are foundational to scientific innovation and inquiry. We are building a…

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Illumina hiring Bioinformatics Software Development in Great Abington, England, United Kingdom

What if the work you did every day could impact the lives of people you know? Or all of humanity?At Illumina, we are expanding access to genomic technology to realize health equity for billions of people around the world. Our efforts enable life-changing discoveries that are transforming human health through…

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What is the AMD Ryzen AI and why does it matter?

If you’re delving into the world of machine learning and artificial intelligence on mobile computing platforms, you will be pleased to know that AMD has something tailored just for you. Meet the Ryzen AI Software Platform, a robust environment designed to work hand-in-hand with AMD’s Ryzen 7040U and 7040HS series…

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The University of Manchester hiring Research Associate in Bioinformatics in Withington, England, United Kingdom

Applications are invited for the role of Post-Doctoral Research Associate in Bioinformatics to work in translational neuro-oncology in the Hamerlik lab in Manchester. The post involves dealing with multi-omic data analysis and storage, focusing particularly on data from spatial multi-omic profiling of brain metastases (incl. GeoMx platform, Mass Spectrometry Imaging)….

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Senior Research Scientist, Bioinformatics job with GenScript

Job Type Full-time We are seeking a motivated and experienced bioinformatics developer to build an AI driven platform focused on analysis of synthetic DNA and mRNA. This will require collecting and analyzing very large data sets built from a variety of sources including sequencing, RNA folding and structure computation and…

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Step-by-Step Guide to Setup Pytorch for Your GPU on Windows 10/11

In this competitive world of technology, Machine Learning and Artificial Intelligence technologies have emerged as a breakthrough for developing advanced AI applications like image recognition, natural language processing, speech translation, and more. However, developing such AI-powered applications would require massive amounts of computational power far beyond the capabilities of CPUs…

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Google Expands Duet AI in Google Cloud for App Development, DevOps, and More

At Google Cloud Next, Google has expanded its always-on collaborator Duet AI with new features aimed at helping developers with application development, DevOps, database management and migration, data analysis and visualization, as well as cybersecurity. Duet AI in Google Cloud provides expert assistance across your entire software development lifecycle….

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Bioconductor – MACPET

DOI: 10.18129/B9.bioc.MACPET     This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MACPET. Model based analysis for paired-end data Bioconductor version: 3.15 The MACPET package can be used for complete interaction analysis for ChIA-PET data. MACPET reads ChIA-PET data in BAM or SAM…

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Senior Software Developer – Dunstable, United Kingdom – EMBL-EBI

Apply Description We are seeking a passionate and energetic full stack senior Software Developer to join our Ontologies Tools team. Our Ontology Tools are used Report this job Apply Found in: Jobtome UK C2 – 22 hours ago AQA Dunstable, United Kingdom Software DeveloperMilton Keynes £45,000 £50,000Hybrid WorkingAre you an…

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Pytorch Vs Tensorflow: Choosing A Deep Learning Framework – Science/Technology

As Artificial Intelligence is being actualized in all divisions of automation. Deep learning is one of the trickiest models used to create and expand the productivity of human-like PCs. To help the Product developers, Google, Facebook, and other enormous tech organizations have released different systems for Python environment where one…

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Zafrens, Inc. Single-cell Bioinformatics Scientist in San Diego, CA | 865232727

Zafrens, Inc., a cutting-edge biotechnology company that is trying to redefine lifesciences product development, is seeking a Single-cell Bioinformatics Scientist. This is a great opportunity for someone with a passion for bioinformatics and an interest in innovative product development to work with a team of creative and adventurous scientists who…

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Georgetown University Bioinformatics Programmer – Department of Biochemistry and Molecular & Cellular Biology and Clinical and Translational Glycoscience Research Center – Georgetown University Medical Cente in Washington, DC | 865093725

Bioinformatics Programmer – Department of Biochemistry and Molecular & Cellular Biology and Clinical and Translational Glycoscience Research Center – Georgetown University Medical Cente Located in a historic neighborhood in the nation’s capital, Georgetown offers rigorous academic programs, a global perspective, exciting ways to take advantage of Washington, D.C., and a…

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Takara Bio USA, Inc. hiring Staff Scientist, Bioinformatics in San Jose, CA

Job Title: Staff Scientist, BioinformaticsReports to: R&D Group Leader, BioinformaticsFLSA Class: ExemptLearn more about our company and how we support you:Takara Bio USA (TBUSA) empowers life science discovery. We bring innovation and inspiration to every scientist – promoting discoveries that improve health and the environment. We hold values that all…

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NVIDIA hiring Software Engineer, PyTorch – Deep Learning in Santa Clara, CA

NVIDIA is hiring software engineers at all experience levels to define and build the tools Deep Learning engineers use across the world to craft, develop, and deploy AI applications! This position will embed you in an ambitious and diverse team that influences all areas of NVIDIA’s AI platform as well…

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Illumina hiring Bioinformatics Intern (Bachelors/Masters/PhD) in United States

What if the work you did every day could impact the lives of people you know? Or all of humanity? At Illumina, we are expanding access to genomic technology to realize health equity for billions of people around the world. Our efforts enable life-changing discoveries that are transforming human health…

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Jr Bioinformatics Analyst – University of Rochester

GENERAL PURPOSE: The Genomics Research Center (GRC) at the University of Rochester is seeking a highly motivated and organized candidate to provide comprehensive analysis support of high-throughput sequence data to customers of the Genomics Research Center (GRC). Our interactive bioinformatics team is focused on fast turn-around of highly reproducible results…

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Polars vs. pandas: What’s the Difference?

If you’ve been keeping up with the advances in Python dataframes in the past year, you couldn’t help hearing about Polars, the powerful dataframe library designed for working with large datasets. Unlike other libraries for working with large datasets, such as Spark, Dask, and Ray, Polars is designed to be…

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Bioinformatics Analyst III job with Frederick National Laboratory for Cancer Research

Bioinformatics Analyst III Job ID: req3697Employee Type: exempt full-timeDivision: Cancer Research Technology ProgramFacility: Rockville: Gaither RdLocation: 2099 Gaither Rd, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research, Inc….

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Building PyTorch From Scratch Terminated – Jetson Nano

PyTorch wheel for Python version >= 3.6 is unavailable. So I just making PyTorch for Python 3.11.0 from scratch. Turns out the process is unexpectedly terminated. Is there any solution to start again from latest checkpoint, since it takes forever to build it in Jetson Nano I don’t wanna start…

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Researcher Fellow in Cancer Bioinformatics at Royal College of Surgeons in Ireland

Reporting to: Dr Simon Furney Location: York House, Dublin 2 Contract/Duration: Specified purpose contract for 3 years Start Date: Autumn 2023 RCSI is a community of academic, research and professional staff working collaboratively to lead the world to better health. Here, you will thrive in an innovative and inclusive atmosphere and your personal development…

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Bioinformatics Analyst III Job in Maryland (MD), $vacancy_industry Career, Full Time Jobs in Frederick National Laboratory for Cancer Research

Bioinformatics Analyst III Job ID: req3697Employee Type: exempt full-timeDivision: Cancer Research Technology ProgramFacility: Rockville: Gaither RdLocation: 2099 Gaither Rd, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research,…

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Senior Bioinformatics Scientist – Image Processing / Algorithms (35432-job) jobs by Illumina Singapore Pte. Ltd. in

Senior Bioinformatics Scientist Illumina is seeking a highly driven and talented bioinformatics scientist to join the Bioinformatics organization, where we are developing novel informatics solutions for Illumina’s multi-omics technologies. Members of the team collaborate closely with lab scientists and engineers to develop new assay and computational workflows. The team is…

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St. Jude Children’s Research Hospital Senior Bioinformatics Research Scientist in Memphis, TN | 863412369

St. Jude Children’s Research Hospital is developing a comprehensive effort to study the immune system in cancer patients, with particular applications aimed at developing and refining immunotherapy approaches. For this effort, bioinformatics is critical, and we are actively searching for a highly motivated scientist who will serve as an informatic…

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