Tag: chi2

Proteins C36m Protein Huang, J., Rauscher, S., Nawrocki, G., Ran, T., Feig, M, de Groot, B.L., Grubmuller, H., and MacKerell, A.D., Jr., “CHARMM36m: An Improved Force Field for Folded and Intrinsically Disordered Proteins,” Nature Methods, 14:71-73, 2016, PMC5199616,[DOI] C36 Protein Best, R.B., Zhu, X., Shim, J., Lopes, P.E.M., Mittal, J.,…

Hi guys, I am very new and dummy with python and I try to write a script to filter some alignments. The filter works removing the sequences for every alignment with a chi2 < 0.05 and writing a new fasta files without those sequences, but I have a problem. I…

Support Vector Machines (SVM) is a powerful machine learning algorithm used for classification and regression analysis. It is based on the idea of finding the optimal boundary between two classes that maximizes the margin between them. However, the challenge with SVM is that it requires a large amount of computational…

What is Anomaly Detection? Anomaly detection, also known as outlier detection or novelty detection, is a method of identifying uncommon events, or data points that don’t conform to the expected pattern in a dataset. Anomaly detection is used in a wide range of applications, such as networking and security-related areas,…

Genome reduction is associated with a termite comb-associated lifestyle For our studies, we collected fungus comb samples originating from mounds of Macrotermes natalensis, Odontotermes spp., and Microtermes spp. termites and were able to obtain seven viable Pseudoxylaria cultures (X802 [Microtermes sp.], Mn132, Mn153, X187, X3-2 [Macrotermes natalensis], and X167, X170LB [Odontotermes…

Codeml giving different chi2 values when reducing the number of sequences 0 Hi, I am using codeml for my positive selection analysis. I have 93 E. coli sequences for my analysis. I run the analysis using the 93 sequences against NSsites model 1 and 2 and the corresponding chi2 value…