Tag: Chromium

lazy loading failed, unable to load shared object rtracklayer.so

Hello! I am working on analyzing a dataset I created with the 10x Chromium Single Cell Multiome kit. In order to add gene annotation to the ATAC data, I am trying to install and use the “EnsDb.Mmusculus.v79” and “BSgenome.Mmusculus.UCSC.mm10” packages with bioconductor. The same ERROR has come up repeatedly whenever…

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[PATCH 07/14] iio: st_sensors: core and lsm9ds0 switch to devm_regulator_bulk_get_enable()

[PATCH 07/14] iio: st_sensors: core and lsm9ds0 switch to devm_regulator_bulk_get_enable() – Jonathan Cameron From: Jonathan Cameron <jic23@kernel.org> To: linux-iio@vger.kernel.org Cc: Matti Vaittinen <mazziesaccount@gmail.com>, Matti Vaittinen <matti.vaittinen@fi.rohmeurope.com>, Cosmin Tanislav <cosmin.tanislav@analog.com>, Jagath Jog J <jagathjog1996@gmail.com>, Sean Nyekjaer <sean@geanix.com>, Dmitry Rokosov <DDRokosov@sberdevices.ru>, Linus Walleij <linus.walleij@linaro.org>, Andy Shevchenko <andriy.shevchenko@linux.intel.com>, Michael Hennerich <michael.hennerich@analog.com>, Lorenzo Bianconi…

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Inferring and perturbing cell fate regulomes in human brain organoids

Experimental methods Stem cell and organoid culture We used six human iPS cell lines (Hoik1, Wibj2, Kucg2 from the HipSci resource47; 409B2 from the RIKEN BRC cell bank; 01F49i-N-B7 (B7) from Institute of Molecular and Clinical Ophthalmology Basel; and WTC from the Allen Institute) and three human ES cell lines (H1-PAX6YFP…

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Broad Institute Study Evaluates Ultima Genomics Sequencer for Single-Cell RNA-Seq

NEW YORK – Results from single-cell RNA sequencing libraries run on the new Ultima Genomics UG100 are “very similar” to those produced on Illumina’s NovaSeq, a new study says. However, the platform shows bias against 3′ gene expression libraries. Led by researchers from the Broad Institute as part of a…

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New Single-Cell ‘Total’ RNA-seq Method Promises More Comprehensive Transcriptome View

This story has been updated to correct information about methods developed by Hao Wu.  NEW YORK – A new method for single-cell RNA sequencing may provide a triple threat: high sensitivity, full-length coverage of RNA, and high throughput. The researchers behind the method — dubbed “vast transcriptome analysis of single cells…

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Terminator Upgrades Single-Cell RNA Sequencing Technology

Japanese scientists have developed a new method for DNA amplification and sequencing that improves the accuracy of single-cell RNA sequencing (scRNA-seq). The new method called TAS-Seq uses a terminal transferase enzyme that amplifies and sequences DNA complementary to mRNA (cDNA) in solid phase on a nanowell/magnetic bead-based cell isolation platform….

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Jobs on jobactive hiring Postdoctoral Bioinformatician in Single Cell and Spatial Omics Data Analysis in Adelaide, South Australia, Australia

Full-Time, 2 Year Contract Salary range $95,000 – $110,000 At the South Australian Health and Medical Research Institute (SAHMRI), we are committed to achieving innovative, ground-breaking health and medical research that fundamentally improves the quality of life for all people. The South Australian Genomics Centre (SAGC) is a multi-institutional, national…

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Bioremediation challenges and progressions | EurekAlert!

This book Bioremediation Challenges and Advancements comprises of eight chapters that focus on the waste source, its adverse impacts on the ecosystem, and the advanced strategies for their remediation along with associated challenges. The first two chapters explain microbe-assisted remediation to detoxify heavy metals and degrade xenobiotic compounds through recent…

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Metal-Assisted Electrochemical Nanoimprinting of Porous and Solid Silicon Wafers

A protocol for metal-assisted chemical imprinting of 3D microscale features with sub-20 nm shape accuracy into solid and porous silicon wafers is presented. Our protocol provides a new patterning method for silicon that enables for the creation of three-dimensional hierarchical microstructures that enable the design of metasurface-based microoptic elements and…

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[PATCH v1 5/9] drm/bridge: ti-sn65dsi86: Fetch bpc via drm_bridge_state

[PATCH v1 5/9] drm/bridge: ti-sn65dsi86: Fetch bpc via drm_bridge_state – Sam Ravnborg From: Sam Ravnborg <sam@ravnborg.org> To: dri-devel@lists.freedesktop.org, Douglas Anderson <dianders@chromium.org> Cc: Rob Clark <robdclark@chromium.org>, Philip Chen <philipchen@chromium.org>, Jitao Shi <jitao.shi@mediatek.com>, Thomas Zimmermann <tzimmermann@suse.de>, Jonas Karlman <jonas@kwiboo.se>, Robert Foss <robert.foss@linaro.org>, Neil Armstrong <narmstrong@baylibre.com>, Jernej Skrabec <jernej.skrabec@gmail.com>, Andrzej Hajda <a.hajda@samsung.com>, Laurent…

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Scipio Bioscience Bets on Hydrogel Tech to Differentiate New Single-Cell RNA-seq Kit

NEW YORK – Paris-based Scipio Bioscience this week announced the European launch of its Asteria hydrogel-based single-cell RNA-seq kit. With less reliance on equipment and reagents, the RNA-seq library preparation kit provides researchers with a flexible benchtop protocol for labeling, isolating, and lysing cells, and recovering labeled mRNA. The Asteria kit comes…

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Quick questions about Alevin and AlevinQC

I have just started using Alevin and I have few basic queries. And I am asking this because I couldn’t find it in the documentation How to know how many reads are uniquely mapping and how many are multi mapping when doing quantification with Alevin. The alevin_meta_info.json says Number of…

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What’s the fastest Windows 10 web browser in 2021?

The most important program on your PC is your web browser. Oh sure, your bread and butter work may be on QuickBooks, Photoshop, or Premiere Pro, but where do you find information or exchange emails? Answer: Your web browser. Heck, Google has proven that all you really need to do…

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