Tag: chromoMap

chromoMap function – RDocumentation

Usage chromoMap( ch.files, data.files, title = c(), ch_gap = 5, ploidy = 1, top_margin = 25, left_margin = 50, chr_width = 15, chr_length = 4, chr_color = c(“black”), data_based_color_map = FALSE, segment_annotation = FALSE, lg_x = 0, lg_y = 0, data_type = c(“numeric”, “categorical”), labels = FALSE, canvas_width = NULL,…

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an R package for interactive visualization of multi-omics data and annotation of chromosomes

Additional file 1. Example of chromoMap interactive plot constructed using various features of chromoMap including polyploidy (used as multi-track), feature-associated data visualization (scatter and bar plots), chromosome heatmaps, data filters (color-coded scatter and bars). Differential gene expression in a cohort of patients positive for COVID19 and healthy individuals (NCBI Gene…

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ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes | BMC Bioinformatics

1. Buels R, Yao E, Diesh CM, Hayes RD, Munoz-Torres M, Helt G, Goodstein DM, Elsik CG, Lewis SE, Stein L, et al. JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol. 2016;17:66. Article  Google Scholar  2. Minio A, Lin J, Gaut BS, Cantu D. How single…

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CRAN Package Check Results for Package chromoMap

CRAN Package Check Results for Package chromoMap CRAN Package Check Results for Package chromoMap Last updated on 2021-12-08 03:58:15 CET. Check Details Version: 0.3.1 Check: dependencies in R code Result: NOTE     Namespace in Imports field not imported from: ‘htmltools’     All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-release-macos-arm64,…

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