Tag: ClustalO

comparing and aligning two sequences to spot protein level differences using Expasy / Uniprot clustalO : bioinformatics

Hi there, confused student. I’ve been using expasy translate to convert two nucleotide sequences into protein where I can then see open reading frames. By then using uniprot clustalO I hoped to paste the open reading frames for both sequences and align them to spot any differences between the two….

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Percent identity matrix from ClustalOmega/Clustalw with Biopython

I have a set of sequences for the YPR193C coding sequence from various yeast strains. I would like to get the percent identity matrix from multiple sequence alignments using ClustalW, Clustal Omega, or MUSCLE using the Biopython wrappers. This should be possible for ClustalW and Clustal Omega based on the…

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ClustalO with multithreading parameter threads appear sleeping

ClustalO with multithreading parameter threads appear sleeping 0 Hello folks, I am running clustalo with threads flag, at the begining clustalo was using the number of threads I specified but when I checked it next day, all of the threads seem sleeping except one. Do you think thats normal, or…

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