Tag: cnetplot

cnetplot: How to control the size of the legend gene number and log2FC

Hi, Does not matter what I do, the legend saying “gene number” and “log2FC” overlaps all the time with the actual plot I tried different parameters of the cnetplot function and also tried to modify the plot after storing the plot to a variable but I do not find the…

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cnetplot with enrichKEGG results

cnetplot with enrichKEGG results 0 @5215d925 Last seen 11 hours ago Spain Hello! I’m trying to use cnetplot function with a KEGG enrichment object obtained from enrichKEGG function. However, I get the same error and I don’t know how to solve it. I’m using clusterProfiler package to perform this analysis….

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Bioconductor – Bioconductor 3.14 Released

Home Bioconductor 3.14 Released October 27, 2021 Bioconductors: We are pleased to announce Bioconductor 3.14, consisting of 2083 software packages, 408 experiment data packages, 904 annotation packages, 29 workflows and 8 books. There are 89 new software packages, 13 new data experiment packages, 10 new annotation packages, 1 new workflow,…

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Can cnetplot plot points change shape in clusterprofiler?

Can cnetplot plot points change shape in clusterprofiler? 0 I have a cnetplot and I am wondering if it is possible for me to do further categorising of the plot by point shape? I have a cnetplot of genes and their interacting pathways, but the genes also have a few…

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arguments to change color, node size and labels size not working

cnetplot() : arguments to change color, node size and labels size not working 0 In cnetplot(), I am trying to use the arguments cex_category and cex_gene to change node size, cex_label_category and cex_label_gene to change labels size, and color_category and color_gene to change colors. However, none of these arguments seem…

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How to colour points in cnetplot of clustprofiler?

I have a cnetplot from running enrichment with kegg using clusterprofiler. I have scores input as the fold change but for each gene in the plot they are not varying in colour to show their difference in the fold change score. My dataset is genes of entrez IDs and then…

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