Tag: codeml

Translation table for annotating fish genomes ? 1 Hi, I heard there was 3 good annotation pipelines for genome annotation. 1) Maker – Need access to rep base (proprietary) 2) Braker – open source 3) Augustus – open source According to the manual Braker pipeline only uses translation_table = 1…

How codeml detects positive selection 0 Hi, I am using the codeml package of the PAML software for positive selection analysis. I have tried to read the manual as well as the other literature of the software but still I have a question about how it actually detects the positive…

Codeml giving different chi2 values when reducing the number of sequences 0 Hi, I am using codeml for my positive selection analysis. I have 93 E. coli sequences for my analysis. I run the analysis using the 93 sequences against NSsites model 1 and 2 and the corresponding chi2 value…