Tag: config.txt

Genome hg19**not found in homer config

I want to use the Homer to do annotation. After I input “annotatePeaks.pl 31512_TH0_D0.bed hg19 > 31512_TH0_D0.ann.txt” , it shows “!!!!Genome hg19 not found in /home/jenny/NGStools/homer/.//config.txt” I used the command “perl /home/jenny/NGStools/homer/configureHomer.pl -install hg19” to install it, and I am sure I installed the hg19 for the homer Then input…

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Error with file guillaumeKUnitigsAtLeast32bases_all.fasta, kUnitigLengths.txt is of size 0, must be at least of size 1.

Hello, I am trying running an assembly with MaSuRCa but am getting an error at the step: “Computing super reads from PE”. here’s the output with the error: [xxxx@vic Bovidae]$ cd Assembly_test/ [xxxx@vic Assembly_test]$ ls assemble.sh guillaumeKUnitigsAtLeast32bases_all.fasta.tmp masurca_assembly.o4302352 meanAndStdevByPrefix.pe.txt pe_data.tmp quorum_mer_db.jf work1 environment.sh guillaumeKUnitigsAtLeast32bases_all.jump.fasta masurca_config.txt pe.cor.fa pe.renamed.fastq super1.err ESTIMATED_GENOME_SIZE.txt masurca_assembly.e4302352…

Continue Reading Error with file guillaumeKUnitigsAtLeast32bases_all.fasta, kUnitigLengths.txt is of size 0, must be at least of size 1.

Jetson nano (B01) configures pytorch and torchvision environment + tensorrtx model transformation + deepstream deployment yolov5 (pro test available)

jetson nano To configure pytorch and torchvision Environmental Science +tensorrt Model transformation +Deepstream Deploy yolov5( Close test available ) Because a game came into contact with jetson nano, Need to use pycharm Train your own model plus yolov5 Target detection , And deployed to jetson nano On , It didn’t…

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HOMER hg19 not found in config.txt

Hi! I am trying to run findMotif.pl from HOMER, in order to detect some regulatory motifs in a set of fasta sequences. When I type: findMotifs.pl sequences.fasta hg19 . I get the following error: !!! hg19 not found in /mnt/lustre/scratch/home/programs/HOMER/.//config.txt Try typing “perl /mnt/lustre/scratch/home/programs/HOMER//.//configureHomer.pl -list” to see available promoter sets…

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