Tag: CRLMM

DOI: 10.18129/B9.bioc.humancytosnp12v2p1hCrlmm     This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see humancytosnp12v2p1hCrlmm. Metadata for fast genotyping with the ‘crlmm’ package Bioconductor version: 3.13 Package with metadata for genotyping Illumina CytoSNP 12 arrays using the ‘crlmm’ package. Author: Rafael A Irizarry Maintainer: Matthew…

Converting Microarray SNP data into VCF format 1 Hello everyone, I have only one microarray data which contains one .CEL file and another intensity .csv file. I’m searching for converting any of the two files into vcf format. After going through Biostars and Bioconductor forums, I found pd.genomewidesnp.6@getdb, crlmm and…

DOI: 10.18129/B9.bioc.human1mduov3bCrlmm     This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see human1mduov3bCrlmm. Metadata for fast genotyping with the ‘crlmm’ package Bioconductor version: 3.10 Package with metadata for genotyping Illumina 1M Duo arrays using the ‘crlmm’ package. Author: Rafael A Irizarry Maintainer: Matthew…

Subjects Normal breast and tumor samples were obtained with the written informed consent from donors and appropriate approval from local ethical committees, with the detailed information described in the respective original publications: normal tissue9, METABRIC14, TCGA35. Differential allelic expression analysis DNA and total RNA from 64 samples of normal breast…

    This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see VanillaICE. A Hidden Markov Model for high throughput genotyping arrays Bioconductor version: 3.4 Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays. Author: Robert Scharpf <rscharpf at jhu.edu>, Kevin Scharpf,…