Tag: CWL

Bioinformatics tools and data retrieval

The Job Dispatcher service at the EMBL-EBI provides access to various sequence analysis tools and a database retrieval system (Dbfetch). This virtual course is split into two sessions running over two days.  During the first session, you will learn how to access and use our sequence…

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Bioinformatics Workflow Developer job with Barrington James

Global biotechnology company focusing on molecular biology and applications, informatics, engineering, electronics, manufacturing and commercialisation. Their sequencing platform allows for rapid insights, that analyse DNA and RNA data. The Customer Analysis Workflows are responsible for communicating bioinformatic analyses to end users through various media from software libraries, notebook tutorials,…

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Data Management Coordinator – Germany Jobs IT Engineering Academic Remote NGO Charity Work

About the team/jobThe Data Science Centre, launched in February 2022 to promote cutting-edge research and services in Data Science across all of EMBL, is looking for a bioinformatician, computational biologist or computer scientist as a Data Management Coordinator. The Data Science Centre will ensure that biological research data at our…

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Computational Biologist, Clinical Bioinformatics – Remote job in Boston, Massachusetts at Dana-Farber Cancer Institute

Computational Biologist, Clinical Bioinformatics – Remote Job Details Job ID: 26821 Location: 450 Brookline Ave, Boston, MA 02215 Category: Clinical Research Employment Type: Full time Work Location: Full Remote: 4-5 days remote/wk Overview The NGS Bioinformatics Group at Dana-Farber Cancer Institute seeks a Computational Biologist to work on Profile, our…

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Postdoc / Research Scientist in Bioinformatics and Computational Genomics

Job Description Are you a computer geek with a strong interest in genomics? Do you want to use your computational skills to solve human diseases? At the Department of Neurology at Harvard Medical School and Brigham & Women’s Hospital, we have two vacant positions: postdoctoral fellow and research scientist in…

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Manager of Bioinformatics in Chicago, IL for University of Chicago (UC)

Details Posted: 22-Apr-22 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Hyde Park Campus Job Description: Leads a team of bioinformaticians and provides technical guidance for the team to follow best practices and deliver data production timely. Collaborates cross-functionally with our user services, software engineering,…

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Color hiring Software Engineer, Bioinformatics in Remote

About Color Color’s mission is to help people lead the healthiest lives that science and medicine can offer. We launched in April 2015 with a simple, affordable genetic test to help people understand their risk for hereditary cancer. In 2017, we added coverage for hereditary heart conditions. Between them, cancer…

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Failure to detect mutations in U2AF1 due to changes in the GRCh38 reference sequence

Materials and Methods Genomic data was collected as part of the MDS National History Study or The Cancer Genome Atlas project and consented appropriately under those protocols 8 Sekeres M.A. Gore S.D. Stablein D.M. DiFronzo N. Abel G.A. DeZern A.E. Troy J.D. Rollison D.E. Thomas J.W. Waclawiw M.A. Liu J.J….

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Could it happen that a cwl created in a different editor is not correctly parsed in rabix composer?

Could it happen that a cwl created in a different editor is not correctly parsed in rabix composer? 0 Hi, I’d need to load in rabix composer (a cwl graphical editor) cwl files (vs.1.0) created in different editors. 90% of the times “external” cwls are correctly parsed, but it could…

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Solvuu hiring Bioinformatics Engineer in United States

Summary At Solvuu, we are building technology to revolutionize bioinformatics and data science. We are seeking an accomplished, self-motivated and ambitious bioinformatics engineer with a strong track record in developing, executing, and maintaining bioinformatics pipelines on AWS for biotech R&D. The successful candidate will have the opportunity to drive and…

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Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health

Job:Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health 0 You will be part of a team of molecular biologists, medical geneticists, and bioinformaticians working together to analyze new and archival clinical cases using high throughput sequencing. As one of a newer team of software engineers, you will have the unique opportunity…

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Senior Bioinformatics Scientist (Remote) – Torre

Description Basepair develops SaaS to manage, analyze and interpret next generation sequencing (NGS) data. Scientists and physicians working in molecular diagnostics, biopharma, assay development at top universities like Harvard, Stanford, NYU, UCSD, etc. use Basepair to make breakthrough medical discoveries and provide better medical care to patients. Founded by a…

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Bioinformatics Software Engineer, Cancer Genomics Research Laboratory (req2036) job with Frederick National Laboratory

PROGRAM DESCRIPTION We are seeking an enthusiastic, creative, and collaborative bioinformatics software engineer to support pipeline development and analysis for our broad portfolio of genomic studies. If you have experience designing and deploying robust, reproducible, production-quality pipelines, then come join our talented team of bioinformaticians dedicated to understanding the genetics…

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CWL capture multiple output files with prefix

CWL capture multiple output files with prefix 0 I have a CommandLineTool demo, and run as: demo –AA file1.txt –BB file2.txt –CC file3.txt –nthreads 4 input file: –AA output file: –BB –CC The fllowing CWL doesn’t work. error: (“Error collecting output for parameter ‘ofile1’:ndemo.cwl:32:7: Did not find output file with…

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