Tag: CWL

Failure to detect mutations in U2AF1 due to changes in the GRCh38 reference sequence

Materials and Methods Genomic data was collected as part of the MDS National History Study or The Cancer Genome Atlas project and consented appropriately under those protocols 8 Sekeres M.A. Gore S.D. Stablein D.M. DiFronzo N. Abel G.A. DeZern A.E. Troy J.D. Rollison D.E. Thomas J.W. Waclawiw M.A. Liu J.J….

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Could it happen that a cwl created in a different editor is not correctly parsed in rabix composer?

Could it happen that a cwl created in a different editor is not correctly parsed in rabix composer? 0 Hi, I’d need to load in rabix composer (a cwl graphical editor) cwl files (vs.1.0) created in different editors. 90% of the times “external” cwls are correctly parsed, but it could…

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Solvuu hiring Bioinformatics Engineer in United States

Summary At Solvuu, we are building technology to revolutionize bioinformatics and data science. We are seeking an accomplished, self-motivated and ambitious bioinformatics engineer with a strong track record in developing, executing, and maintaining bioinformatics pipelines on AWS for biotech R&D. The successful candidate will have the opportunity to drive and…

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Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health

Job:Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health 0 You will be part of a team of molecular biologists, medical geneticists, and bioinformaticians working together to analyze new and archival clinical cases using high throughput sequencing. As one of a newer team of software engineers, you will have the unique opportunity…

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Senior Bioinformatics Scientist (Remote) – Torre

Description Basepair develops SaaS to manage, analyze and interpret next generation sequencing (NGS) data. Scientists and physicians working in molecular diagnostics, biopharma, assay development at top universities like Harvard, Stanford, NYU, UCSD, etc. use Basepair to make breakthrough medical discoveries and provide better medical care to patients. Founded by a…

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Bioinformatics Software Engineer, Cancer Genomics Research Laboratory (req2036) job with Frederick National Laboratory

PROGRAM DESCRIPTION We are seeking an enthusiastic, creative, and collaborative bioinformatics software engineer to support pipeline development and analysis for our broad portfolio of genomic studies. If you have experience designing and deploying robust, reproducible, production-quality pipelines, then come join our talented team of bioinformaticians dedicated to understanding the genetics…

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CWL capture multiple output files with prefix

CWL capture multiple output files with prefix 0 I have a CommandLineTool demo, and run as: demo –AA file1.txt –BB file2.txt –CC file3.txt –nthreads 4 input file: –AA output file: –BB –CC The fllowing CWL doesn’t work. error: (“Error collecting output for parameter ‘ofile1’:ndemo.cwl:32:7: Did not find output file with…

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