Categories
Tag: DESC
python – Reading files asynchronously hangs within Pytorch Dataset when DataLoader.num_workers > 1
I’m training a classifier on raw-bytes in binary files. Each file can be several megabytes long. I have a dataset with several millions of binaries in it. Loading all this data at once and keeping it all in memory is very expensive, so I wanted to write an IterableDataset to…
ggplot2 – Make more room for lables in ggplot in r
Is there a way to have this plot squeezed a little so labels of extreme cases (A and G) have could show up completely. code: x <- LETTERS[1:11] y <- c(9, 4, 6, 8, 5, 7, -9, -4, -6, -8, -5) z <- seq(-1, 1, by = 0.2) dat <-…
r – How to add a title on the center-left of the plot in ggplot2?
As a very late contribution to TidyTuesday challenge of Bob Ross’s Paintings, I have tried to plot 10 paintings of Bob Ross. Without further background, here is my code; library(tidyverse) library(showtext) library(showtextdb) library(ggthemes) library(ggtext) library(magick) library(ggimage) library(cropcircles) library(cowplot) library(patchwork) font_add_google(“Lora”, bold.wt = 700, family = “plottitle”) font_add_google(“Roboto Slab”, family =…
No genes mapped in clusterprofiler gseGO
Hello! I’m having issues generating an adequate geneList for running gseGO in clusterProfiler, using keytype = “GO” Similar issues have been described here: No gene mapped gseGO code is: gse <- gseGO(geneList = gene_List, ont = “ALL”, #ont one of “BP”, “MF”, “CC” or “ALL” OrgDb = OrgDb, minGSSize =…
Running RStudio in Snowpark Container Services | by Gabriel Mullen | Dec, 2023
I ran across this article on Running R in Snowpark Container Services. It’s great! But when I tried to duplicate it, aside from not having a Posit Workspace Key, I had some issues with the details. So I wanted to just document the steps that I took to get RStudio…
[slurm-users] Slurm versions 23.11.1, 23.02.7, 22.05.11 are now available (CVE-2023-49933 through CVE-2023-49938)
Slurm versions 23.11.1, 23.02.7, 22.05.11 are now available and address a number of recently-discovered security issues. They’ve been assigned CVE-2023-49933 through CVE-2023-49938. SchedMD customers were informed on November 29th and provided a patch on request; this process is documented in our security policy. [1] There are no mitigations available for…
ggplot2 – Graph only showing part of the results in R
I am working with data regarding dogs up for adoption in Washington and Oregon and wanted to see if the gender of the dogs has anything to do with their ability to be adopted. dput(dd_clean_df[1:10, ]) top_gender_breeds <- dd_clean_df %>% group_by(contact_state, breed_primary, sex) %>% summarise(count = n()) %>% arrange(contact_state, desc(count))…
SQL request from NCBI metadata and stat_analysis tables
I’m trying to do a SQL request on the BigQuery Google service to search for family names present in my sample DRR000836, and more precisly, on the cyanobacteria phylum part but I’m not sure how to do it… Here are the 2 SQL requests that I would like to merge…
SLURM: RuntimeError: CUDA error: CUDA-capable device(s) is/are busy or unavailable – distributed
I am trying to train EG3D on a slurm cluster using multiple gpus. But am getting the following error: File “/home/dmpribak/ondemand/data/sys/myjobs/projects/default/4/train.py”, line 395, in main launch_training(c=c, desc=desc, outdir=opts.outdir, dry_run=opts.dry_run) File “/home/dmpribak/ondemand/data/sys/myjobs/projects/default/4/train.py”, line 105, in launch_training torch.multiprocessing.spawn(fn=subprocess_fn, args=(c, temp_dir), nprocs=c.num_gpus) File “/home/dmpribak/.conda/envs/eg3d3/lib/python3.11/site-packages/torch/multiprocessing/spawn.py”, line 246, in spawn return start_processes(fn, args, nprocs, join,…
Predicting Forest Fires Using PyTorch
In this article, I use transfer learning with PyTorch* to classify aerial photos according to the fire danger they convey using only image details. The MODIS fire dataset establishes known fires in California from 2018 to 2020. The MODIS (Moderate Resolution Imaging Spectroradiometer) dataset contains high-resolution imagery and labeled map…
[slurm-users] job_desc.pn-min-memory in LUA jobsubmit-plugin
Hello, we are using Slurm Version 23.02.3 and are working on a job_submit-plugin written in LUA. During the development of the script we found out, that values we give for –mem will appear in the job-submit-plugin in the variable job_desc.pn-min-memory and for –mem-per-cpu will appear in the variable…
r – What do I need to do to modify my plot (ggplot2) to a gt table?
I know it’s generally frowned upon to ask multiple questions in a thread but I want to make sure I’m going down the right path with my sub-steps. I would like to add the following ggplot to a gt table as outlined here. This plot shows a selected player’s goals…
Progress Lighting Phase 3 1
Progress Lighting-P300411-009-CS-Collection: Phase 3, Material: Aluminum, Finish Color: Brushed Nickel, Width: 3″, Height: 5.78″, Length: 24″, Backplate Width: 6.09″, Backplate Length: 4.96″, Lamping Type: LED, Number Of Bulbs: 1, Wattage: 18 Watts, Cri: 90, Lumens: 1644, Moisture Rating: Damp Rated, Desc: The Phase 3 Collection LED Medium Linear Vanity Light…
[slurm-users] Unable to submit job (ReqNodeNotAvail, UnavailableNodes)
Hi there, First of all, apologies for the rather verbose email. Newbie here, wanting to set up a minimal slurm cluster on Debian 12. I installed slurm-wlm (22.05.8) on the head node and slurmd (also 22.05.8) on the compute node via apt. I have one head, one compute node, and…
Bioconductor – gDRstyle
DOI: 10.18129/B9.bioc.gDRstyle A package with style requirements for the gDR suite Bioconductor version: Release (3.18) Package fills a helper package role for whole gDR suite. It helps to support good development practices by keeping style requirements and style tests for other packages. It also contains build helpers to make…
Write Quarto books with Bioconductor
{rebook} is another book rendering package currently used by Bioconductor to build book packages such as OSCA.* and SingleRBook. Differences with {rebook}-based books OSCA books provided by Bioconductor are rendered upon building by the Bioconductor Build System (BBS). They rely on {rebook} to orchestrate the rendering. Briefly, OSCA books have…
r markdown – RStudio using kable to print a table of multiple variable sums and percentages
I’d like to create a table using kable that knits to Word. I can create the table I want for one variable, but I’d like to present multiple variables in one table. Data: library(tidyr) library(knitr) library(tidyverse) df <- data.frame( rating1=c(“Very important”, “Important”, “Unimportant”, “Unimportant”, “Very important”, “Important”), rating2=c(“Important”, “Important”, “Neutral”,…
MPG Dataset Analysis using R and ggplot
# Load the required libraries library(ggplot2) library(dplyr) # Load the mpg dataset data(mpg) # Calculate the average, median, and standard deviation of the mpg variable avg_mpg <- mean(mpg$mpg) median_mpg <- median(mpg$mpg) sd_mpg <- sd(mpg$mpg) # Print the calculated statistics cat(“Average MPG:”, avg_mpg, “\n”) cat(“Median MPG:”, median_mpg, “\n”) cat(“Standard Deviation of…
A Bioconductor workflow for processing, evaluating,…
Introduction Proteins are responsible for carrying out a multitude of biological tasks, implementing cellular functionality and determining phenotype. Mass spectrometry (MS)-based expression proteomics allows protein abundance to be quantified and compared between samples. In turn, differential protein abundance can be used to explore how biological systems respond to a perturbation….
add support for AMD Crater
[PATCH net-next 0/2] amd-xgbe: add support for AMD Crater * [PATCH net-next 0/2] amd-xgbe: add support for AMD Crater @ 2023-10-18 14:44 Raju Rangoju 2023-10-18 14:44 ` [PATCH net-next 1/2] amd-xgbe: add support for new pci device id 0x1641 Raju Rangoju 2023-10-18 14:44 ` [PATCH net-next 2/2] amd-xgbe: Add support…
Error creating SPIA data for KEGG Orthology (KO) Database KEGG xml files
Hi all, I’m trying to create a SPIA data file for all 483 xml files for the KEGG Orthology (KO) Database. I’m working with a non-model organism that is not supported by KEGG as it’s own organism, so I have to use the KEGG Orthology (KO) Database instead of a…
[Bug 2243052] Review Request: python-torchvision
bugzilla.redhat.com/show_bug.cgi?id=2243052 — Comment #2 from Tom Rix <trix@xxxxxxxxxx> — Spec URL: trix.fedorapeople.org/python-torchvision.spec SRPM URL: trix.fedorapeople.org/python-torchvision-0.16.0-3.fc40.src.rpm Changed from py3_ to pyprojec_ — You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component bugzilla.redhat.com/show_bug.cgi?id=2243052 Report this…
[slurm-users] Slurm versions 23.02.6 and 22.05.10 are now available (CVE-2023-41914)
Slurm versions 23.02.6 and 22.05.10 are now available to address a number of filesystem race conditions that could let an attacker take control of an arbitrary file, or remove entire directories’ contents (CVE-2023-41914). SchedMD customers were informed on September 27th and provided a patch on request; this process is documented…
[Bug 2242971] New: Review Request: python-torch
bugzilla.redhat.com/show_bug.cgi?id=2242971 Bug ID: 2242971 Summary: Review Request: python-torch – PyTorch Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/python-torch.spec SRPM URL: trix.fedorapeople.org/python-torch-2.1.0-2.fc40.src.rpm This is a minimal, cpu only, no…
[Bug 2242971] Review Request: python-torch
bugzilla.redhat.com/show_bug.cgi?id=2242971 Fedora Review Service <fedora-review-bot@xxxxxxxxxxxxxxxxx> changed: What |Removed |Added —————————————————————————- URL| |https://github.com/pytorch/ | |pytorch — Comment #2 from Fedora Review Service <fedora-review-bot@xxxxxxxxxxxxxxxxx> — Copr build: copr.fedorainfracloud.org/coprs/build/6511531 (succeeded) Review template: download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2242971-python-torch/fedora-rawhide-x86_64/06511531-python-torch/fedora-review/review.txt Please take a look if any issues were found. — This comment was created by the fedora-review-service github.com/FrostyX/fedora-review-service If you…
How to enrich product data with generative AI using Vertex AI
Product Information Management (PIM) is a critical process in the retail industry to manage product data, such as descriptions, images, and other attributes. In this blog post, we will show how to use Large Language Models (LLMs) with Vertex AI to enrich product data, which can improve the customer experience…
[Bug 2241790] Review Request: python-tinygrad
bugzilla.redhat.com/show_bug.cgi?id=2241790 Benson Muite <benson_muite@xxxxxxxxxxxxx> changed: What |Removed |Added —————————————————————————- Summary|Review Request: tinygrad – |Review Request: |You like pytorch? You like |python-tinygrad – You like |micrograd? You love |pytorch? You like |tinygrad! |micrograd? You love | |tinygrad! — Comment #3 from Benson Muite <benson_muite@xxxxxxxxxxxxx> — Thanks. Updated. Put all files in…
drivers/extcon/extcon-gpio.c – linux-imx – Git at Google
/* * extcon_gpio.c – Single-state GPIO extcon driver based on extcon class * * Copyright (C) 2008 Google, Inc. * Author: Mike Lockwood <lockwood@android.com> * * Modified by MyungJoo Ham <myungjoo.ham@samsung.com> to support extcon * (originally switch class is supported) * * This software is licensed under the terms of…
gmteunisse/Fantaxtic source: R/top_taxa.R
#’ Get the most abundant taxa from a phyloseq object #’ #’ This function identifies the top \eqn{n} taxa in a phyloseq object. Users specify the #’ summary statistic that is used to rank the taxa, e.g. \code{sum}, \code{mean} or #’ \code{median}. Furthermore, it is possible to add one or…
[Bug 2242399] New: Review Request: xnnpack
bugzilla.redhat.com/show_bug.cgi?id=2242399 Bug ID: 2242399 Summary: Review Request: xnnpack – A PyTorch neural net library Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/xnnpack.spec SRPM URL: trix.fedorapeople.org/xnnpack-0.0%5egit20221221.51a9875-1.fc40.src.rpm XNNPACK is a…
[Bug 2242399] Review Request: xnnpack
bugzilla.redhat.com/show_bug.cgi?id=2242399 Fedora Review Service <fedora-review-bot@xxxxxxxxxxxxxxxxx> changed: What |Removed |Added —————————————————————————- URL| |https://github.com/google/% | |{upstream_name} — Comment #1 from Fedora Review Service <fedora-review-bot@xxxxxxxxxxxxxxxxx> — Copr build: copr.fedorainfracloud.org/coprs/build/6494707 (succeeded) Review template: download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2242399-xnnpack/fedora-rawhide-x86_64/06494707-xnnpack/fedora-review/review.txt Please take a look if any issues were found. — This comment was created by the fedora-review-service github.com/FrostyX/fedora-review-service If you…
avrdude/teensy.c at main – avrdude
/* * avrdude – A Downloader/Uploader for AVR device programmers * Copyright (C) 2020 Marius Greuel * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version…
[Bug 2240967] Review Request: pthreadpool
bugzilla.redhat.com/show_bug.cgi?id=2240967 — Comment #2 from Onuralp Sezer <thunderbirdtr@xxxxxxxxx> — First thing I notice is version part and it should be like this Version: 0 Release: 1.%{date0}git%{shortcommit0}%{?dist} And license is not MIT but BSD github.com/Maratyszcza/pthreadpool/blob/master/LICENSE — You are receiving this mail because: You are always notified about changes to this product…
linux/pdata.h at master – linux
/* SPDX-License-Identifier: GPL-2.0-only */ /* * Platform data for Cirrus Logic Madera codecs * * Copyright (C) 2015-2018 Cirrus Logic */ #ifndef MADERA_PDATA_H #define MADERA_PDATA_H #include <linux/kernel.h> #include <linux/regulator/arizona-ldo1.h> #include <linux/regulator/arizona-micsupp.h> #include <linux/regulator/machine.h> #include <sound/madera-pdata.h> #define MADERA_MAX_MICBIAS 4 #define MADERA_MAX_CHILD_MICBIAS 4 #define MADERA_MAX_GPSW 2 struct gpio_desc; struct pinctrl_map; struct madera_codec_pdata;…
Issues Installing pytorch through jetson inference install script – Jetson Nano
More debug info: Command “/usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-yfzvgbyx/grpcio/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” install –record /tmp/pip-b0li_63y-record/install-record.txt –single-version-externally-managed –compile –user –prefix=” failed with error code 1 in /tmp/pip-build-yfzvgbyx/grpcio/Exception information:Traceback (most recent call last):File “/usr/lib/python3/dist-packages/pip/basecommand.py”, line 215, in mainstatus = self.run(options, args)File “/usr/lib/python3/dist-packages/pip/commands/install.py”, line 360, in runprefix=options.prefix_path,File “/usr/lib/python3/dist-packages/pip/req/req_set.py”, line 784,…
Recommended update for slurm SUSE-RU-2023:3759-1
Announcement ID: SUSE-RU-2023:3759-1 Rating: moderate References: Affected Products: HPC Module 15-SP5 openSUSE Leap 15.5 SUSE Linux Enterprise Desktop 15 SP5 SUSE Linux Enterprise High Performance Computing 15 SP5 SUSE Linux Enterprise Micro 5.5 SUSE Linux Enterprise Real Time 15 SP5 SUSE Linux Enterprise Server 15 SP5 SUSE Linux Enterprise Server…
[Bug 2240398] Review Request: pocketfft
bugzilla.redhat.com/show_bug.cgi?id=2240398 Benson Muite <benson_muite@xxxxxxxxxxxxx> changed: What |Removed |Added —————————————————————————- Flags|fedora-review? |fedora-review+ Status|ASSIGNED |POST — Comment #3 from Benson Muite <benson_muite@xxxxxxxxxxxxx> — Thanks. Approved. — You are receiving this mail because: You are always notified about changes to this product and component You are on the CC list for the bug….
ggplot2 – Include information within a bar graph in R
library(tidyverse) library(forcats) df <- population df |> filter(year == 2010) |> arrange(desc(population)) |> group_by(country) df <- df |> filter(year == 2010) |> mutate(pct = proportions(population) * 100) |> filter(country %in% c(“China”, “India”, “United States of America”, “Indonesia”, “Brazil”)) df |> ggplot(aes(x = fct_reorder(country, desc(population)), y = pct, fill = fct_reorder(country,…
[Bug 2240302] New: Review Request: gloo
bugzilla.redhat.com/show_bug.cgi?id=2240302 Bug ID: 2240302 Summary: Review Request: gloo – A PyTorch communication library Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/gloo.spec SRPM URL: trix.fedorapeople.org/gloo-0.5.0%5egit20230824.01a0c81-1.fc40.src.rpm Gloo is a collective…
High pvalues when using clusterProfiler for seurat
High pvalues when using clusterProfiler for seurat 0 Hi, I am trying to run clusterProfiler::GSEA version 4.8.3 for each cluster of my SeuratObj When ranking the DEG based on logFC I get decent ES/NES scores however my q/p values are usually > 0.05 sometimes even >0.5. However, when I re-run…
[Bug 2239184] Review Request: FXdiv
bugzilla.redhat.com/show_bug.cgi?id=2239184 — Comment #1 from Tom Rix <trix@xxxxxxxxxx> — This commit shows the intended use in PyTorch github.com/trixirt/pytorch-fedora/commit/d059adff9770cc1a683b6fa47c2e3fe0f413dfc9 — You are receiving this mail because: You are always notified about changes to this product and component You are on the CC list for the bug. bugzilla.redhat.com/show_bug.cgi?id=2239184 Report this comment as…
[Bug 2239184] New: Review Request: FXdiv
bugzilla.redhat.com/show_bug.cgi?id=2239184 Bug ID: 2239184 Summary: Review Request: FXdiv – A PyTorch fixed point division, math header Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/FXdiv.spec SRPM URL: trix.fedorapeople.org/FXdiv-1.0%5egit20201208.63058ef-1.fc40.src.rpm Header-only…
jsonserializer – OpenAPI `v3/api-docs` returning an array of ascii integers instead of OpenApi json
My OpenApi Config class is @Configuration public class OpenApiConfiguration { @Bean public OpenAPI customOpenAPI() { return new OpenAPI().info(apiInfo()); } private Info apiInfo() { return new Info() .title(API_INFO_TITLE) .description(API_INFO_DESC); } @Bean public GsonHttpMessageConverter getMessGsonHttpMessageConverter(GsonBuilder gsonBuilder) { GsonHttpMessageConverter converter = new GsonHttpMessageConverter(); gsonBuilder.disableHtmlEscaping(); gsonBuilder.registerTypeAdapter(Json.class, new SpringfoxjsonToGsonAdapter()) .registerTypeAdapter(ChangeDriver.class, new InterfaceAdapter<CULayer>()) .registerTypeAdapter(ChangeDriverData.class, new InterfaceAdapter<TxnCULayer>())…
[Bug 2238217] Review Request: FP16
bugzilla.redhat.com/show_bug.cgi?id=2238217 — Comment #2 from Fedora Admin user for bugzilla script actions <fedora-admin-xmlrpc@xxxxxxxxxxxxxxxxx> — The Pagure repository was created at src.fedoraproject.org/rpms/FP16 — You are receiving this mail because: You are always notified about changes to this product and component You are on the CC list for the bug. bugzilla.redhat.com/show_bug.cgi?id=2238217 Report…
[Bug 2238217] New: Review Request: FP16
bugzilla.redhat.com/show_bug.cgi?id=2238217 Bug ID: 2238217 Summary: Review Request: FP16 – A PyTorch half-precision floating point type dependency Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/FP16.spec SRPM URL: trix.fedorapeople.org/FP16-1.0%5egit20210317.0a92994-1.fc40.src.rpm FAS:…
r – ggplot2 left justify axis label face_grid
I’m trying to left justify the axis labels with ggplot2. Below is the reproducible code. When I try to facet the plot by group, the labels dont align even with hjust=0 option. How do I left align all the Y axis labels? library(dplyr) library(reshape2) library(ggplot2) dat=read.csv(textConnection( “Category,Value1,Value2,Total,Group Geography A,10,10,20,1 Geo…
Printable Templates Free
Change Scale To Percent Ggplot Change Scale To Percent Ggplot, Change Scale Ggplot2 Percentage, Change Color Scale In Ggplot, Change Axis To Percent Ggplot, Change Scale On Y Axis Ggplot – [desc-1] [desc-2] [desc-7] Look no even more than printable templates in case you are looking for a effective and…
[Bug 2233128] Review Request: python-flasgger
bugzilla.redhat.com/show_bug.cgi?id=2233128 — Comment #4 from Fedora Review Service <fedora-review-bot@xxxxxxxxxxxxxxxxx> — Copr build: copr.fedorainfracloud.org/coprs/build/6327194 (succeeded) Review template: download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2233128-python-flasgger/fedora-rawhide-x86_64/06327194-python-flasgger/fedora-review/review.txt Please take a look if any issues were found. — This comment was created by the fedora-review-service github.com/FrostyX/fedora-review-service If you want to trigger a new Copr build, add a comment containing new Spec…
[PATCH 2/2] coresight: trbe: Allocate platform data per device
[PATCH 2/2] coresight: trbe: Allocate platform data per device – Suzuki K Poulose From: Suzuki K Poulose <suzuki.poulose@arm.com> To: hejunhao3@huawei.com Cc: coresight@lists.linaro.org, linux-kernel@vger.kernel.org, linux-arm-kernel@lists.infradead.org, jonathan.cameron@huawei.com, leo.yan@linaro.org, mike.leach@linaro.org, james.clark@arm.com, linuxarm@huawei.com, yangyicong@huawei.com, prime.zeng@hisilicon.com, Suzuki K Poulose <suzuki.poulose@arm.com>, Anshuman Khandual <anshuman.khandual@arm.com> Subject: [PATCH 2/2] coresight: trbe: Allocate platform data per device Date: Wed,…
Re: [PATCH 2/2] coresight: trbe: Allocate platform data per device
Re: [PATCH 2/2] coresight: trbe: Allocate platform data per device – Anshuman Khandual From: Anshuman Khandual <anshuman.khandual@arm.com> To: Suzuki K Poulose <suzuki.poulose@arm.com>, hejunhao3@huawei.com Cc: coresight@lists.linaro.org, linux-kernel@vger.kernel.org, linux-arm-kernel@lists.infradead.org, jonathan.cameron@huawei.com, leo.yan@linaro.org, mike.leach@linaro.org, james.clark@arm.com, linuxarm@huawei.com, yangyicong@huawei.com, prime.zeng@hisilicon.com Subject: Re: [PATCH 2/2] coresight: trbe: Allocate platform data per device Date: Thu, 17 Aug 2023…
r – With ggplot2, is there a way to only label plot points of one line when using a multi-line plot design?
I have plotted 2 lines on a graph using ggplot, specially using the “select” and “gather” tools to collapse the two line variables into key-value pairs using this method (solution 2 on here): www.datanovia.com/en/blog/how-to-create-a-ggplot-with-multiple-lines/ Everything works except I can’t figure out how label the points of just ONE line using…
[Bug 2229525] New: Review Request: golang-github-google-gnostic
bugzilla.redhat.com/show_bug.cgi?id=2229525 Bug ID: 2229525 Summary: Review Request: golang-github-google-gnostic – A compiler for APIs described by the OpenAPI Specification Product: Fedora Version: rawhide Status: NEW Component: Package Review Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: zebob.m@xxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: eclipseo.fedorapeople.org/for-review/golang-github-google-gnostic.spec SRPM URL: eclipseo.fedorapeople.org/for-review/golang-github-google-gnostic-0.6.9-1.fc38.src.rpm Description: A compiler…
[Bug 2224860] Review Request: golang-github-deepmap-oapi-codegen
bugzilla.redhat.com/show_bug.cgi?id=2224860 W. Michael Petullo <mike@xxxxxxxx> changed: What |Removed |Added —————————————————————————- CC| |mike@xxxxxxxx Flags| |fedora-review+ Assignee|nobody@xxxxxxxxxxxxxxxxx |mike@xxxxxxxx — Comment #1 from W. Michael Petullo <mike@xxxxxxxx> — Performed a brief review, as go2rpm generated the package. – License ok – Latest version packaged (at time of review request) – Builds in mock…
The Engineer’s Guide to Enriching Streams and Dimensions
Data — it’s the new oil, the new gold, the new … you get the idea. There’s a whole lot of it, and it’s valuable. But unless you’re into data hoarding, the point isn’t just to collect it; you want to use it. You want to massage it, query it,…
[Help] torch to onnx export – deployment
Hi guysI tried to export GitHub – autonomousvision/unimatch: [TPAMI’23] Unifying Flow, Stereo and Depth Estimation model to onnx torch.onnx.export(model, # model being run args=(right, left, ‘self_swin2d_cross_swin1d’, [2, 8], [-1, 4], [-1, 1], 3, False, ‘stereo’, None, None, 1. / 0.5, 1. / 10, 64, False, False), # model input (or…
Problem with goseq – error
Hello, I’m trying to do GO analysis using goseq but I get this error: < In pcls(G) : initial point very close to some inequality constraints Loading required package: AnnotationDbi Loading required package: stats4 Loading required package: BiocGenerics Loading required package: paral>> as input I had this: To add more…
Jazz up your ggplots! | Water Data For The Nation Blog
Useful tricks to elevate your data viz via `ggplot` extension packages in R Date Posted July 21, 2023 Last Updated July 21, 2023 Author Elmera AzadpourAlthea ArcherHayley Corson-DoschCee Nell Reading Time 23 minutes Share At Vizlab, we make fun and accessible data visualizations to communicate USGS research and data. Upon…
Building AI-powered apps on Google Cloud databases using pgvector, LLMs and LangChain
Cloud SQL for PostgreSQL and AlloyDB for PostgreSQL now support the pgvector extension, bringing the power of vector search operations to PostgreSQL databases. You can read the full announcement here. In this step-by-step tutorial, we will show you how to add generative AI features to your own applications with just…
Bioconductor – gDRstyle (development version)
DOI: 10.18129/B9.bioc.gDRstyle This is the development version of gDRstyle; to use it, please install the devel version of Bioconductor. A package with style requirements for the gDR suite Bioconductor version: Development (3.18) Package fills a helper package role for whole gDR suite. It helps to support good development practices…
Error in markdown when I try to knit ggplot2 output in PDF – R Markdown
PiRockLingustic: aes(x=M, y=ADAS11, group=RID, colour=factor(RID)) + Assuming that M and ADAS11 are continuous and RID is discrete and that the same subset of DD is plot-able in an ide session, the reason lies in the toolchain being used for rendering to pdf. If our version is the same, the trouble…
Enable OHCI functionality and register into DM
From: Sergiu Moga <sergiu.m…@microchip.com> Register the OHCI driver into DM by properly initializing the required clocks and pins required by the DT node of OHCI. In order for the VBUS to stay enabled, a `child_pre_probe` method has been added to overcome the DM core disabling it in `usb_scan_device`: when the…
DESeq2 with nbinomGLM issues
DESeq2 with nbinomGLM issues 0 @andrebolerbarros-16788 Last seen 6 hours ago Portugal Hi everyone, I was performing some DEGs and got this message: Warning messages: 1: In nbinomGLM(x = x, Y = YNZ, size = size, weights = weightsNZ, … : the line search routine failed, possibly due to insufficient…
Bioconductor – ompBAM
DOI: 10.18129/B9.bioc.ompBAM This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ompBAM. C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files Bioconductor version: 3.16 This packages provides C++ header files for developers wishing to create R packages that processes…
Selecting CDS from genbank file interval
Selecting CDS from genbank file interval 0 Hello, I tried writing a script in perl that extracts from two parameters the CDS portions with their description and output them in a .txt file, but it just comes out empty. Help! #!/usr/bin/perl use strict; use warnings; # Get the interval data…
[slurm-users] GPU Gres Type inconsistencies
Hi all, I’m trying to set up GPU Gres Types to correctly identify the installed hardware (generation and memory size). I’m using a mix of explicit configuration (to set a friendly type name) and autodetection (to handle the cores and links detection). I’m seeing two related issues which I…
OpenAPI call to get the last 30 days of aggregated availability/reachability
Average availability over the last 30 days for all devices, up to 10,000, sorted by availability, ascending. (Least available first) daHOST:8581/odata/api/availabilitymfs?$apply=groupby(DeviceItemID, aggregate(im_Availability with average as Value))&$orderby=Value asc&$top=10000&$skip=0&top=0&&resolution=DAY&period=1m&$format=text/csv&$expand=device&$select=device/Name,Value Average availability over the last 30 days for all devices, up to 10,000, sorted by availability, descending. (Most available first) daHOST:8581/odata/api/availabilitymfs?$apply=groupby(DeviceItemID, aggregate(im_Availability with…
How to export a PyTorch model for HuggingFace?
I have been training my custom Image classification model on the PyTorch transformers library to deploy to hugging face however, I cannot figure out how to export the model in the correct format for HuggingFace with its respective config.json file. I’m new to PyTorch and AI so any help would…
r – How can I arrange a bar plot using ggplot2 based on the distribution proportions of variables?
I’m looking for a way to arrange the bar plot produced with ggplot2 by descending order of “utsugds2gp_22(happy condition)” that equal to 1 (category=not happy) within each scode1_22 group (area). The original bar plot I generated is below: My codes are as following : fill <- c(“white”, “#E1B378”) ka %>%…
‘ggplot2’ Palettes From Tintin Comic Books
[This article was first published on pacha.dev/blog, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here) Want to share your content on R-bloggers? click here if you have a blog, or here if you don’t. R and Shiny Training: If you find this…
fGSEA collapsePathways function not working
fGSEA collapsePathways function not working 0 Hello all, I’m running the package fgsea and I’m having trouble with the collapsePathways function. When not using that function, I get the expected data frame with 8 columns (pathway, pval, NES, etc.) that I can then plot using ggplot. However, when I try…
Christian Mills – Hands-On Hand Gesture Recognition: Fine-Tuning Image Classifiers with PyTorch and the timm library for Beginners
Introduction Welcome to this hands-on guide to fine-tuning image classifiers with PyTorch and the timm library! Fine-tuning refers to taking a pre-trained model and adjusting its parameters using a new dataset to enhance its performance on a specific task. We can leverage pre-trained models to achieve high performance even when…
[PATCH 1/3] w1: gpio: Don’t use platform data for driver data
[PATCH 1/3] w1: gpio: Don’t use platform data for driver data – Uwe Kleine-König From: “Uwe Kleine-König” <u.kleine-koenig@pengutronix.de> To: Krzysztof Kozlowski <krzysztof.kozlowski@linaro.org> Cc: Rob Herring <robh@kernel.org>, Greg Kroah-Hartman <gregkh@linuxfoundation.org>, linux-kernel@vger.kernel.org, Philipp Marek <philipp@marek.priv.at> Subject: [PATCH 1/3] w1: gpio: Don’t use platform data for driver data Date: Thu, 25 May 2023…
c# – Add all versions to the OpenApi doc
I’m very sorry for my poor knowledge here but I think I’m missing something here.. I want to generate OpenAPI docs to my .net core web app. I also want to use versions for my methods. So I do it like this [ApiController] [Route(“v{version:apiVersion}/Do”)] public class DoController : ControllerBase {…
java – OpenAPI generator How to generate method with Spring paging and sorting
I am trying to generate as much code as possible for application using OpenAPI generator. Some of the requests are get with support for paging and sorting. Using spring it is easy to create @GetMapping(“/snakes”) public ResponseEntity<List<Snake>> findAll(Pageable pageable) This makes the /snakes endpoint to support paging and sorting using…
r – non-numeric argument to binary operator error in Rstudio
This question was caused by a typo or a problem that can no longer be reproduced. While similar questions may be on-topic here, this one was resolved in a way less likely to help future readers. While trying to knit my RMarkdown I got this…
error when converting hmmer table to off table
Hello, I performed an alignment using hmmer hmmsearch tool using metagenomic contigs as a query and a hydrocarbon database (hydrocarbon.hmm file). I n first instance I first retrieved all ORFs from the contigs and translated them with esl-translate program as following: esl-translate -c 11 input_contigs.fa > translated_orfs.fa After getting the…
java – Spring OpenApi DTOs in GET requests
We use OpenAPI to generate the interface description for the services exposed in one of our server applications. We use that openapi.yaml then to generate client-sided libraries that will interact with these services for various languages. As the server backend uses the typical Maven + Java Spring Boot techstack we…
miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
We are looking for pathogen miRNAs in host tissues among reads that couldn’t map to the host genome. The relevant commands are below; mapper.pl “$file”_HOST_UNMAPPED.fq -e -h -m -p $PathogenGenomeBasename -t “$file”_HOST_UNMAPPED_vs_PATHOGEN.arf -v -s “$file”_HOST_UNMAPPED_vs_PATHOGEN_COLLAPSED.fa miRDeep2.pl “$file”_HOST_UNMAPPED_vs_PATHOGEN_COLLAPSED.fa $PathogenGenomeBasename.fa HOST_UNMAPPED_vs_PATHOGEN.arf $PathogenMatureMiRNA $PathogenMiRNA $PathogenPrecursorMiRNA -c -d -g -1 According to this analysis…
Issues Building Pytorch on Jetpack 4.4 – Jetson AGX Xavier
al3xh May 3, 2023, 2:41pm 1 I’m attempting to build a pytorch v1.4 wheel using the instructions found here but am running into some issues that I believe is due to cuDNN being version 8.0 instead of 7.0. For example: ../caffe2/operators/conv_op_cudnn.cc:1173:11: error: ‘CUDNN_CONVOLUTION_BWD_FILTER_SPECIFY_WORKSPACE_LIMIT’ was not declared in this scope CUDNN_CONVOLUTION_BWD_FILTER_SPECIFY_WORKSPACE_LIMIT,…
Error in `dplyr::mutate()`
Hey all, I am trying to run this script in R but due to some reason I am getting the following error, I don’t know what I am missing. Any help would be appreciated. library(“tidyverse”) library(“ggrepel”) library(“dplyr”) df |> dplyr::mutate( label=ifelse( avg_log2FC >= nth(avg_log2FC, 10, desc(avg_log2FC)) | avg_logFC <= nth(avg_log2FC,…
Push OMAP2 quirk down into TWL4030 driver
From Linus Walleij <> Date Mon, 01 May 2023 11:05:21 +0200 Subject [PATCH 1/3] ARM/gpio: Push OMAP2 quirk down into TWL4030 driver The TWL4030 GPIO driver has a custom platform data .set_up()callback to call back into the platform and do misc stuff suchas hog and export a GPIO for WLAN…
r – Add label at the top af a barplote using a diferent column – ggplot2
I have a dataframe in R #creating a dataset codigo <- paste0(“COD”, sprintf(“%03d”, 1:4)) vgene <- paste0(“VG”, LETTERS[1:8]) set.seed(123) codigo <- sample(codigos, 40, replace = TRUE) vgene <- sample(vgene, 40, replace = TRUE) datos_vgene <- data.frame(codigo, vgene) codigo vgene 1 COD001 VGG 2 COD002 VGG 3 COD003 VGC 4 COD004…
Get USB hub reset GPIO from descriptor
From Linus Walleij <> Date Mon, 01 May 2023 11:05:22 +0200 Subject [PATCH 2/3] ARM: omap2: Get USB hub reset GPIO from descriptor This switches the USB hub GPIO reset line handling in theOMAP2 pdata quirks over to using GPIO descriptors to avoid usingthe global GPIO numberspace.Since the GPIOs are…
p-fold plot
p-fold plot 1 I want to construct this plot, and I have already performed the DESeq analysis. This is how the data looks: Gene p_val avg_logFC pct.1 pct.2 p_val_adj HLA-B 1.69E-152 0.719935845 0.993 0.988 2.38E-148 VAMP5 2.73E-97 1.137804386 0.87 0.527 3.85E-93 PSME2 6.25E-88 0.820693535 0.965 0.88 8.80E-84 STAT1 1.03E-83 0.890453249…
r – Change predefined label at the top of barplot – ggplot2
I want to add labels to my ggplot graph. The graph was created with the “freq” column, which contains the previously calculated percentage values. At the top of the graph, I want to add the sum per group of the “n” variable instead of the predefined variable. I have had…
Building REST APIs with Platformatic DB
Introduction Building web APIs using the REST architectural style can help us create well structured and efficient APIs for our web applications. However, it can be difficult to apply effectively. If we want to build a REST API with Node.js, we’ll typically start by designing the API interface, integrating a…
[PATCH v6 07/13] coresight: Store pointers to connections rather than an array of them
[PATCH v6 07/13] coresight: Store pointers to connections rather than an array of them – James Clark From: James Clark <james.clark@arm.com> To: coresight@lists.linaro.org, quic_jinlmao@quicinc.com, mike.leach@linaro.org, suzuki.poulose@arm.com Cc: James Clark <james.clark@arm.com>, Leo Yan <leo.yan@linaro.org>, Alexander Shishkin <alexander.shishkin@linux.intel.com>, Mathieu Poirier <mathieu.poirier@linaro.org>, Greg Kroah-Hartman <gregkh@linuxfoundation.org>, linux-arm-kernel@lists.infradead.org, linux-kernel@vger.kernel.org Subject: [PATCH v6 07/13] coresight: Store…
geoalchemy2: autopkgtest regression on s390x: AssertionError
Source: geoalchemy2 Version: 0.13.1-2 Severity: serious Tags: sid bookworm bookworm-ignore User: debian…@lists.debian.org Usertags: regression Dear maintainer(s), With a recent upload of geoalchemy2 the autopkgtest of geoalchemy2 fails in testing on s390x when that autopkgtest is run with the binary packages of geoalchemy2 from unstable. It passes when run with only…
r – How to plot a barplot using ggplot2
I have a dataframe, that I want to use to plot a bar plot. The numeric variable is jumbled and I sorted it into descedning order. I want to plot the new sorted dataframe using ggplot but the barplot is not giving me the desired output. Name <- c(“Jon”, “Bill”,…
r – Problems installing Biostrings. Failing to install GenomeInfoDb
I have seen this issue being recurrent and tried many options for the last two days but non yielded to correct installation of any of these packages. I used BiocManager as suggested in other issues, also tried to install from local source, nothing seems to be working. This issue started…
ggplot2 – R conditional mutate within function
Since there is not statistics involved in the question, I think it belongs in the stackexchange where I see most R questions. I don’t know how to port the question so I will let someone else do it. But here is the solution – which might be less readable than…
MSigDB SQLite Database – GeneSetEnrichmentAnalysisWiki
From GeneSetEnrichmentAnalysisWiki GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact Introduction With the release of MSigDB 2023.1 we have created a new SQLite database for the fully annotated gene sets in both the Human (2023.1.Hs) and the Mouse (2023.1.Ms) resources. Each ships as a single-file database…
javascript – openapi return 404 on large file using swagger ui
php generating a large file of api specification on localhost:8080/api/openapi but when ever first time it load returns 404 error . swagger ui javascript framework is use to consume api specifications window.onload = function() { //<editor-fold desc=”Changeable Configuration Block”> // the following lines will be replaced by docker/configurator, when it…
[PATCHv2 08/12] power: supply: generic-adc-battery: use simple-battery API
[PATCHv2 08/12] power: supply: generic-adc-battery: use simple-battery API – Sebastian Reichel From: Sebastian Reichel <sre@kernel.org> To: Sebastian Reichel <sre@kernel.org> Cc: Linus Walleij <linus.walleij@linaro.org>, Matti Vaittinen <mazziesaccount@gmail.com>, Rob Herring <robh+dt@kernel.org>, Krzysztof Kozlowski <krzysztof.kozlowski+dt@linaro.org>, linux-kernel@vger.kernel.org, linux-pm@vger.kernel.org, devicetree@vger.kernel.org Subject: [PATCHv2 08/12] power: supply: generic-adc-battery: use simple-battery API Date: Tue, 14 Mar 2023 23:55:31…
ADC Therapeutics : Annual Report – Form 6-K
ADC Therapeutics SA 2022 Annual Report Table of Contents Letter to Shareholders Business Update Financial Review Corporate Governance Report from the Auditor on the Consolidated IFRS Financial Statements Consolidated IFRS Financial Statements for the Year Ended December 31, 2022 Report from the Auditor on the Statutory Financial Statements of ADC…
[bullseye] r-cran-ggplot2 depends on missing libpq5 v13.8
Hi, I am on bullseye and am trying to install the package r-cran-ggplot2. This fails with E: Failed to fetch deb.debian.org/debian/pool/main/p/postgresql-13/libpq5_13.8-0%2bdeb11u1_amd64.deb 404 Not Found [IP: 146.75.122.132 80] (full output below). There seems to be a dependency on libpq5 version 13.8 whereas the version available for bullseye is 13.9. Any ideas how to…
[PATCH v2 5/9] coresight: Dynamically add connections
[PATCH v2 5/9] coresight: Dynamically add connections – James Clark From: James Clark <james.clark@arm.com> To: coresight@lists.linaro.org Cc: James Clark <james.clark@arm.com>, Mathieu Poirier <mathieu.poirier@linaro.org>, Suzuki K Poulose <suzuki.poulose@arm.com>, Mike Leach <mike.leach@linaro.org>, Leo Yan <leo.yan@linaro.org>, Alexander Shishkin <alexander.shishkin@linux.intel.com>, linux-arm-kernel@lists.infradead.org, linux-kernel@vger.kernel.org Subject: [PATCH v2 5/9] coresight: Dynamically add connections Date: Fri, 10 Mar…
[PATCH v1 2/2] media: lm3560: convent to OF
[PATCH v1 2/2] media: lm3560: convent to OF – Svyatoslav Ryhel From: Svyatoslav Ryhel <clamor95@gmail.com> To: Mauro Carvalho Chehab <mchehab@kernel.org>, Rob Herring <robh+dt@kernel.org>, Krzysztof Kozlowski <krzysztof.kozlowski+dt@linaro.org>, Svyatoslav Ryhel <clamor95@gmail.com>, Hans Verkuil <hverkuil-cisco@xs4all.nl>, Luca Ceresoli <luca.ceresoli@bootlin.com>, Jean Delvare <jdelvare@suse.de>, Sebastian Reichel <sebastian.reichel@collabora.com>, Daniel Jeong <gshark.jeong@gmail.com>, Ldd-Mlp <ldd-mlp@list.ti.com> Cc: linux-media@vger.kernel.org, devicetree@vger.kernel.org, linux-kernel@vger.kernel.org…
Training loss did not increase
I am training PyTorch model for binary classification and my input vector of length 561 [341 is one hot encoding] and the others are features between 0 and 1. my output is [0,1] or [1,0] . My issue is that the training loss is always decrease i tried to try…
[PATCH 8/8] clk: Add KUnit tests for clks registered with struct clk_parent_data
[PATCH 8/8] clk: Add KUnit tests for clks registered with struct clk_parent_data – Stephen Boyd From: Stephen Boyd <sboyd@kernel.org> To: Michael Turquette <mturquette@baylibre.com>, Stephen Boyd <sboyd@kernel.org> Cc: linux-kernel@vger.kernel.org, linux-clk@vger.kernel.org, patches@lists.linux.dev, Brendan Higgins <brendan.higgins@linux.dev>, David Gow <davidgow@google.com>, Greg Kroah-Hartman <gregkh@linuxfoundation.org>, “Rafael J . Wysocki” <rafael@kernel.org>, Richard Weinberger <richard@nod.at>, Anton Ivanov <anton.ivanov@cambridgegreys.com>,…